PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco010602.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 139aa MW: 14708.3 Da PI: 10.3598 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 27.3 | 9.3e-09 | 50 | 74 | 32 | 56 |
AP2 32 slgkfgtaeeAakaaiaarkklege 56 lg+f+taeeAa+a+++a+ +++g+ Aco010602.1 50 GLGTFDTAEEAARAYDRAAFAMRGH 74 59*********************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 11.825 | 25 | 81 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.2E-9 | 45 | 87 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.34E-11 | 49 | 82 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.4E-14 | 51 | 82 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.51E-15 | 51 | 81 | No hit | No description |
Pfam | PF00847 | 3.1E-5 | 51 | 74 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MEAHRRVVFR RGGKTRAGRR GGGTGIGGAR RRGRVRGGDT RLEPPWGPHG LGTFDTAEEA 60 ARAYDRAAFA MRGHLAVLNF PSEAPALPSS RGGHAGAGPS ASSSSSRAPD DVIEFEYLDD 120 EVLDELLKPE EEKGGKKK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 9e-14 | 22 | 122 | 4 | 114 | Ethylene-responsive transcription factor ERF096 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020092861.1 | 1e-41 | LOW QUALITY PROTEIN: ethylene-responsive transcription factor ERF096-like | ||||
Swissprot | Q9LTC5 | 4e-20 | ERF98_ARATH; Ethylene-responsive transcription factor ERF098 | ||||
TrEMBL | A0A199W9H3 | 5e-42 | A0A199W9H3_ANACO; Ethylene-responsive transcription factor ERF098 | ||||
STRING | XP_006489745.1 | 1e-20 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP103 | 37 | 465 |
Link Out ? help Back to Top | |
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Phytozome | Aco010602.1 |
Publications ? help Back to Top | |||
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