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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco010539.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | SBP | ||||||||
Protein Properties | Length: 210aa MW: 22650.9 Da PI: 9.6998 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 135.5 | 1.7e-42 | 98 | 173 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 Cq+e+C+adl+eak+yhrrhkvCe+hskapvv+v+gl+qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk++ Aco010539.1 98 CQAERCAADLTEAKRYHRRHKVCEAHSKAPVVVVAGLRQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKSS 173 **************************************************************************87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.9E-35 | 92 | 159 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.599 | 95 | 172 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 8.73E-40 | 96 | 176 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.9E-32 | 98 | 171 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010321 | Biological Process | regulation of vegetative phase change | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MERKATSGES KRKETKPRRE PPPSFTSAAV VAADDAEEEE EEDSPAAAAA AAGAEEEKKR 60 RSGSSSSPLT SSAVVARRGS SSSSSAAAAA GAAAPPSCQA ERCAADLTEA KRYHRRHKVC 120 EAHSKAPVVV VAGLRQRFCQ QCSRFHELSE FDDSKRSCRR RLAGHNERRR KSSLETQGEG 180 SSRCRQSDQD GRVPINISGN PPYKHFQIR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-38 | 88 | 171 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00634 | PBM | Transfer from PK22320.1 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020091963.1 | 1e-147 | squamosa promoter-binding-like protein 3 | ||||
Swissprot | Q6Z461 | 3e-47 | SPL13_ORYSJ; Squamosa promoter-binding-like protein 13 | ||||
TrEMBL | A0A199W681 | 4e-92 | A0A199W681_ANACO; Squamosa promoter-binding-like protein 13 | ||||
STRING | GSMUA_Achr4P23650_001 | 8e-66 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8524 | 32 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53160.2 | 1e-41 | squamosa promoter binding protein-like 4 |
Link Out ? help Back to Top | |
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Phytozome | Aco010539.1 |