PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco010240.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 299aa    MW: 30813.4 Da    PI: 7.0469
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco010240.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023109131123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C+ C+ksF++   L  H  +H
  Aco010240.1 109 YECKTCNKSFPSFQALGGHRASH 131
                  99**********99999998887 PP
2zf-C2H2120.00066204226123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  ++C++Cg  F +   L  H+r+H
  Aco010240.1 204 HECSICGSEFASGQALGGHMRRH 226
                  78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.8E-13108133IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.845109136IPR007087Zinc finger, C2H2
SuperFamilySSF576678.97E-9109131No hitNo description
SMARTSM003550.034109131IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280111131IPR007087Zinc finger, C2H2
SuperFamilySSF576678.97E-9199226No hitNo description
PfamPF139122.0E-11203227IPR007087Zinc finger, C2H2
PROSITE profilePS501579.598204226IPR007087Zinc finger, C2H2
SMARTSM003550.031204226IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280206226IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
METLEGNPSV DSSLLGALVK GKRTKRLRPP TLSSSSSSSS SAAAAAAAAA ESSSTSAAAT  60
DEDEDMAQCL ILLAHGGAAP VPSPAERSPP RPRSSADSSS AAAAAPSAYE CKTCNKSFPS  120
FQALGGHRAS HKKPRTDDKP KASPLPNPNP NDGDGEHDKD IPITLPLPLP LHPSIDPPPK  180
PNTSHNNSII NNNNNNNNNK IRVHECSICG SEFASGQALG GHMRRHRPLS AAEPPAEAKK  240
QPPPPPPPLP LPLDLNLPAP ADDDAPAAAN GYPNPPVFAF GAKPALVFFA PALVDCHY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020115044.10.0zinc finger protein ZAT5-like
TrEMBLA0A199UQI31e-123A0A199UQI3_ANACO; Zinc finger protein ZAT5
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20133285
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-27C2H2 family protein