 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Aco010221.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
| Family |
LBD |
| Protein Properties |
Length: 220aa MW: 23626.5 Da PI: 7.1953 |
| Description |
LBD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aco010221.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF260 | 121.8 | 3.7e-38 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelall 97
+C aCk+lrrkCak Cv+apyf +eq +++fa++hk+FGasn +kll++lp +r +a+ ++ yeA+ar+rdP+yG+v++i++lqqq+ +l+a++a+l
Aco010221.1 7 PCGACKFLRRKCAKRCVFAPYFSHEQgAAHFAAIHKVFGASNASKLLAHLPVADRCEAAVTISYEAQARVRDPIYGCVAHIFALQQQVVNLQAQVASL 104
7*************************89********************************************************************99 PP
DUF260 98 kee 100
k++
Aco010221.1 105 KAQ 107
987 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 220 aa
Download sequence Send
to blast |
MTGFGSPCGA CKFLRRKCAK RCVFAPYFSH EQGAAHFAAI HKVFGASNAS KLLAHLPVAD 60
RCEAAVTISY EAQARVRDPI YGCVAHIFAL QQQVVNLQAQ VASLKAQARQ GHINCSPSTL 120
SLQEDNFSSR FLPSQAQHGS GFSQKPSNSI NAETMLCYEN GLLNSISFPA PHQCYDPHSY 180
VNDDPVAFAA ADESSSCAMA TLDAQQDVQQ TSFAYLNSA*
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Acts as positive regulator of adventitious (crown) root formation by promoting its initiation (PubMed:15829602, PubMed:15960615). Acts as positive regulator of lateral root formation. Regulated by the auxin response factor and transcriptional activator ARF23/ARF1 (PubMed:15829602). Involved in auxin-mediated cell dedifferentiation, and may promote the initial cell division in the pericycle cells adjacent to the peripheral vascular cylinder at the base of the stem (PubMed:15960615). May act upstream of the gene regulatory network controlling adventitious root (crown) development (PubMed:21806801). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615, ECO:0000269|PubMed:21806801}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: Induced by auxin (PubMed:15829602, PubMed:15960615). Induced by ethylene (PubMed:15960615). {ECO:0000269|PubMed:15829602, ECO:0000269|PubMed:15960615}. |
| Publications
? help Back to Top |
- Coudert Y,Périn C,Courtois B,Khong NG,Gantet P
Genetic control of root development in rice, the model cereal.
Trends Plant Sci., 2010. 15(4): p. 219-26
[PMID:20153971] - Kitomi Y, et al.
The auxin responsive AP2/ERF transcription factor CROWN ROOTLESS5 is involved in crown root initiation in rice through the induction of OsRR1, a type-A response regulator of cytokinin signaling.
Plant J., 2011. 67(3): p. 472-84
[PMID:21481033] - Coudert Y, et al.
Transcript profiling of crown rootless1 mutant stem base reveals new elements associated with crown root development in rice.
BMC Genomics, 2011. 12: p. 387
[PMID:21806801]
|
