PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009986.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 278aa    MW: 28593.5 Da    PI: 11.7964
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009986.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-1872121255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  +y+GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++aa+++ +g
  Aco009986.1  72 RYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALCVKG 121
                  69****998.**********843...6**********************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.32572131IPR001471AP2/ERF domain
PfamPF008477.5E-1372121IPR001471AP2/ERF domain
CDDcd000187.23E-1672126No hitNo description
SMARTSM003806.9E-3172135IPR001471AP2/ERF domain
SuperFamilySSF541712.03E-1872126IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.3E-2872126IPR001471AP2/ERF domain
PRINTSPR003674.1E-107384IPR001471AP2/ERF domain
PRINTSPR003674.1E-1095111IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MSDPPPRCAE ARESSGSSSS TTSSSRSSPS SPSSPSSSSS SSSSSSSSEG TLQSRKPKAA  60
GGEEEKKRRH GRYRGVRMRA WGKWVSEIRE PRKKSRIWLG TFPTPEMAAR AHDAAALCVK  120
GAAARLRVKS PPSSKFSCTF KMRMVPGAVG DDAAAAVVGV GAPPWAAVVV GVPALAARHA  180
VLRQRPVADE PRAAGRVGAG KPAAAHVRPL LRIRSFDGRV VAVVVLADRS TAAFPRGRAA  240
PACPQGGLLL EVLIGADARE FPVSVAGRSG IGGIEGG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-15701281271Ethylene-responsive transcription factor ERF096
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0048577e-53AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06.
GenBankAP0149587e-53AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY2582817e-53AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.19e-23ERF family protein