 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Aco009986.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
| Family |
ERF |
| Protein Properties |
Length: 278aa MW: 28593.5 Da PI: 11.7964 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aco009986.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 58.3 | 1.9e-18 | 72 | 121 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+GVr + +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++aa+++ +g
Aco009986.1 72 RYRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTPEMAARAHDAAALCVKG 121
69****998.**********843...6**********************99877 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 278 aa
Download sequence Send
to blast |
MSDPPPRCAE ARESSGSSSS TTSSSRSSPS SPSSPSSSSS SSSSSSSSEG TLQSRKPKAA 60
GGEEEKKRRH GRYRGVRMRA WGKWVSEIRE PRKKSRIWLG TFPTPEMAAR AHDAAALCVK 120
GAAARLRVKS PPSSKFSCTF KMRMVPGAVG DDAAAAVVGV GAPPWAAVVV GVPALAARHA 180
VLRQRPVADE PRAAGRVGAG KPAAAHVRPL LRIRSFDGRV VAVVVLADRS TAAFPRGRAA 240
PACPQGGLLL EVLIGADARE FPVSVAGRSG IGGIEGG*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 5wx9_A | 4e-15 | 70 | 128 | 12 | 71 | Ethylene-responsive transcription factor ERF096 |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | AP004857 | 7e-53 | AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06. |
| GenBank | AP014958 | 7e-53 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
| GenBank | AY258281 | 7e-53 | AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds. |
