PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco009985.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 158aa MW: 16405.6 Da PI: 10.2744 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.8 | 3.2e-19 | 44 | 94 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + y+GVr + +g+Wv+eIr+p++ ++r++lg+f t+e+Aa+a++aa+++ +g Aco009985.1 44 PSYRGVRMRA-WGKWVSEIREPRK---KTRIWLGTFPTPEMAARAHDAAALCVKG 94 57*****998.**********843...6**********************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.22E-20 | 44 | 104 | No hit | No description |
Pfam | PF00847 | 7.6E-14 | 44 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-21 | 45 | 103 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.5E-32 | 45 | 103 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.13 | 45 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-36 | 45 | 108 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-10 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 158 aa Download sequence Send to blast |
MTQSGGADSA EPGSKAMSPP SSGAATSPGA PTKRGRGAGS TRHPSYRGVR MRAWGKWVSE 60 IREPRKKTRI WLGTFPTPEM AARAHDAAAL CVKGPAAALN FPELAAALPR PATLAPRDVQ 120 AAAALAAAME EPGFASDQLW AVPDGCVPTV FESRLWD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-19 | 35 | 103 | 5 | 73 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP004857 | 6e-80 | AP004857.2 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1711_D06. | |||
GenBank | AP014958 | 6e-80 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY258281 | 6e-80 | AY258281.1 Oryza sativa (japonica cultivar-group) CR223 putative AP2 domain-containing protein gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020097734.1 | 1e-108 | dehydration-responsive element-binding protein 3-like | ||||
Swissprot | Q9LYD3 | 2e-49 | DREB3_ARATH; Dehydration-responsive element-binding protein 3 | ||||
TrEMBL | A0A199VY32 | 6e-58 | A0A199VY32_ANACO; Dehydration-responsive element-binding protein 3 | ||||
STRING | AT5G11590.1 | 9e-48 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G11590.1 | 1e-31 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco009985.1 |
Publications ? help Back to Top | |||
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