PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB

Protein Properties

Length: 311aa MW: 34467.3 Da PI: 7.7472

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco009968.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51.2	2.8e-16	36	83	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+WT+eEde l +v++ G g+W+t +++ g+ R++k+c++rw +yl Aco009968.1 36 RGPWTAEEDEVLSSYVRREGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 83 89****************************99**********97 PP
2	Myb_DNA-binding	47.7	3.5e-15	89	134	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l Aco009968.1 89 RGPIAPDEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 134 566679**************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.8E-22	27	85	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.188	31	83	IPR017930	Myb domain
SuperFamily	SSF46689	6.74E-29	33	130	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-11	35	85	IPR001005	SANT/Myb domain
Pfam	PF00249	5.4E-14	36	83	IPR001005	SANT/Myb domain
CDD	cd00167	1.17E-9	38	83	No hit	No description
PROSITE profile	PS51294	25.164	84	138	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.8E-25	86	139	IPR009057	Homeodomain-like
SMART	SM00717	2.7E-14	88	136	IPR001005	SANT/Myb domain
Pfam	PF00249	6.3E-14	90	134	IPR001005	SANT/Myb domain
CDD	cd00167	1.32E-11	94	134	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010090	Biological Process	trichome morphogenesis
GO:0010468	Biological Process	regulation of gene expression
GO:0048354	Biological Process	mucilage biosynthetic process involved in seed coat development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MKNPVGASSS SLPSRGRGGV GGRGATPCCS KMGVKRGPWT AEEDEVLSSY VRREGEGRWR 60 TLPKRAGLLR CGKSCRLRWM NYLRPSIKRG PIAPDEEDLI LRLHRLLGNR WSLIAGRIPG 120 RTDNEIKNYW NTHLSKKLIS QGIDPRTHKP LVSSNHRPNH SNNPLPSLTS HGLHPPPATL 180 PYDLNPNPNP NNPTNNPNPE PNPSPAPGEV LRDHDHGNYL LHGVNLEQED DVFSSFFDSL 240 INDDIFLQQH QHQNIIESNG DNNENSDKSN DQIAAMDSGF VFGSLWEGTI SSQVSMFENL 300 HGQFINHAGN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	6e-24	36	138	7	108	B-MYB
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1 or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020097731.1	0.0	transcription repressor MYB5-like
Swissprot	Q38850	2e-82	MYB5_ARATH; Transcription repressor MYB5
TrEMBL	A0A2H3Y0H2	1e-107	A0A2H3Y0H2_PHODC; transcription repressor MYB5-like
STRING	XP_008791485.1	1e-108	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP116	37	448

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G13540.1	2e-80	myb domain protein 5

Link Out ? help Back to Top
Phytozome	Aco009968.1

Publications ? help Back to Top
Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128]