PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco009755.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C3H
Protein Properties Length: 212aa    MW: 23433.4 Da    PI: 8.1074
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco009755.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH28.33e-09327126
                 --S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                 +kt+lC+ f++ G C+yGdrC+FaHg
  Aco009755.1  3 FKTRLCQGFSA-GCCPYGDRCTFAHG 27
                 79*********.*************9 PP
2zf-CCCH22.71.7e-075578326
                 S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                 t++Cr f+  G C+yG+rC+F H+
  Aco009755.1 55 TKICRMFQSHGACSYGERCTFRHV 78
                 789******************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.239229IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-14234IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-8233IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4228IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-6327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.0E-95278IPR000571Zinc finger, CCCH-type
SMARTSM003562.1E-45279IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.0845280IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.89E-75380IPR000571Zinc finger, CCCH-type
PfamPF006421.0E-55578IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295104132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6104131IPR000571Zinc finger, CCCH-type
SMARTSM003560.0012106131IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-6107130IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MFFKTRLCQG FSAGCCPYGD RCTFAHGVAE LRPPRPNWQA MTATPQWPPQ PANATKICRM  60
FQSHGACSYG ERCTFRHVTE AEAAYTRLHH HRHGNGPPIR GPAPLQRKPC FEWLSKGRCE  120
YGDRCIFSHE AAVAGTQKSG DGGELNSASG GVAPPSRPLR EAADEPEIEF QFEPEPEPEP  180
TSVRPVQGRG FQKMLRKKKI AGIYGDSFDE E*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020097910.11e-156zinc finger CCCH domain-containing protein 39-like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP133642030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.12e-15C3H family protein