PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aco008896.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 307aa MW: 32600.1 Da PI: 6.2397

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco008896.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00051	140	162	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ykC C+k+F++ L H +H Aco008896.1 140 YKCRTCDKRFPSFQALGGHRASH 162 9***********99999998887 PP
2	zf-C2H2	12.6	0.00042	209	231	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +Cg F++ L H+r+H Aco008896.1 209 HECAICGSEFNSGQALGGHMRKH 231 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13912	1.7E-11	139	164	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.21E-8	139	162	No hit	No description
SMART	SM00355	0.04	140	162	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.676	140	167	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	142	162	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	2.21E-8	204	231	No hit	No description
Pfam	PF13912	9.6E-11	208	232	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.098	209	231	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.369	209	231	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	211	231	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 307 aa Download sequence Send to blast
MGTQEEEEEA MDCSTTNKDA NGAFDYEFAA VAVAVTKGKR TKRWRIHPPP FDYEFAAVAV 60 AVTKGKRTKR WRIHPPPPQV PTAAVEPDSS SSSDSSAAAA AADEEDEDEL DMANCLILLA 120 QGHRAERSEP DPGPTPCDTY KCRTCDKRFP SFQALGGHRA SHKKPKPSPP PAANEDVQRT 180 SVDSSSSKLA TAAAANNNNN NNNNNSRVHE CAICGSEFNS GQALGGHMRK HRPLGVVPAA 240 AGPAVPPAEE AKNKERILLS LDLNLPAPAD DDSAGGSKEL QRAPPFGLSN NPPPMIFSAS 300 LVGCHY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020095473.1	0.0	zinc finger protein ZAT5-like
TrEMBL	A0A199UV14	1e-128	A0A199UV14_ANACO; Zinc finger protein ZAT5
STRING	XP_008807698.1	2e-55	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2013	32	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03510.1	2e-22	C2H2 family protein

Link Out ? help Back to Top
Phytozome	Aco008896.1