PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco008558.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | G2-like | ||||||||
Protein Properties | Length: 131aa MW: 14566 Da PI: 6.5104 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 69.9 | 3.9e-22 | 2 | 41 | 17 | 56 |
G2-like 17 aveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 a+e+LGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ Aco008558.1 2 ALEHLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 41 89************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.638 | 1 | 43 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.36E-9 | 2 | 44 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.2E-18 | 2 | 41 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.6E-18 | 2 | 45 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
MALEHLGGAQ VATPKQIREL MKVDGLTNDE VKSHLQKYRL HTRRMPNTAP NPNPQVVVMG 60 GLWMQQQQQQ QQQQQQQDQD TASQQSTSQS GSPQGPLQFN SHGRALSMTT TTNGDSCEEE 120 DGRSESYSWK * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may play a role in regulatory networks controlling development and metabolism. {ECO:0000250|UniProtKB:Q6Z869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM666822 | 1e-111 | KM666822.1 Ananas bracteatus clone 52223c microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010941843.1 | 8e-49 | myb family transcription factor EFM | ||||
Swissprot | Q5VRW2 | 1e-26 | NOH1_ORYSJ; Transcription factor NIGTH1 | ||||
TrEMBL | A0A199W603 | 5e-87 | A0A199W603_ANACO; Transcription factor PCL1 | ||||
STRING | XP_008792589.1 | 7e-48 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1817 | 37 | 107 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G03500.1 | 3e-28 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco008558.1 |
Publications ? help Back to Top | |||
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