 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Aco008435.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
| Family |
M-type_MADS |
| Protein Properties |
Length: 332aa MW: 35788.8 Da PI: 7.4737 |
| Description |
M-type_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aco008435.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 68.9 | 4.6e-22 | 80 | 124 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
kri ++ rqv fskRr+g++KKA+ELSvLC+a++av++fs+ gk
Aco008435.1 80 KRIASEEARQVCFSKRRAGLFKKANELSVLCGADIAVVVFSPAGK 124
799****************************************98 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 332 aa
Download sequence Send
to blast |
MHYYVRRRYV ASVSHHSNDD EDEDNKQHRT AMMVASAAAA ESSNNNNNNN NNNNCSSSSS 60
KNTYNNKRKQ SLGRQKIEIK RIASEEARQV CFSKRRAGLF KKANELSVLC GADIAVVVFS 120
PAGKPFSFGH PSVPSVLRRF LSPDNPHNHN HSHSAADSTP AAAAAVAAEL NARQAELAAA 180
VEGGRRRRAA LEEALRARRA GMWDADVDAM ALPELEAFAA ALERLRAEAA LRADHLLMLD 240
AAAKGFGAES GGDLYYGGST SYGGGGGGLG LGFDWNNSNN NVIEGKVLML PPPPLPLPLP 300
LPLPPPPPFH HLHGPTHDLQ FEYDADQYGF Y*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1egw_A | 4e-16 | 73 | 147 | 1 | 75 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_B | 4e-16 | 73 | 147 | 1 | 75 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_C | 4e-16 | 73 | 147 | 1 | 75 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 1egw_D | 4e-16 | 73 | 147 | 1 | 75 | MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POLYPEPTIDE A |
| 5f28_A | 4e-16 | 72 | 147 | 1 | 76 | MEF2C |
| 5f28_B | 4e-16 | 72 | 147 | 1 | 76 | MEF2C |
| 5f28_C | 4e-16 | 72 | 147 | 1 | 76 | MEF2C |
| 5f28_D | 4e-16 | 72 | 147 | 1 | 76 | MEF2C |
| Search in ModeBase |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | EU962654 | 3e-55 | EU962654.1 Zea mays clone 244495 DNA binding protein mRNA, complete cds. |
