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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Aco008315.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family |
Trihelix |
Protein Properties |
Length: 357aa MW: 39377.1 Da PI: 8.37 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Aco008315.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 46.7 | 8.5e-15 | 104 | 172 | 2 | 70 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
Wt +e+laL++ + ++e+ +++ + ++W+ vs+ ++e g+ r ++qCk +we++ +y++i+++e +
Aco008315.1 104 WTTHETLALVNEVAALDEAWSKSLSSYQKWKIVSDSCAESGVVRASNQCKRRWESILLEYRRIRRWECR 172
******************************************************************976 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 357 aa
Download sequence Send
to blast |
KKEPHKKKKK KKKLIEIQGE KKEKKKNHRA TRSRKIHQVI LNSKAMQQHQ QQSDPLCVVQ 60 ALEATTKKKT TTTTKTKGET LASPSHGPGG SSSRCTRSQA APNWTTHETL ALVNEVAALD 120 EAWSKSLSSY QKWKIVSDSC AESGVVRASN QCKRRWESIL LEYRRIRRWE CRNGVGSYWG 180 LDGGRRKGLG LPVSFDREVF DSMDAVIKVD EAHPGPGNSD SEELIGNAGG SEAPVAAADA 240 VDAEMADAGT DADEDLDSDN ETNVKPQSNP EKAQELAIML QENAQHIHSI LKRELTENPS 300 PDRPRADLPR PNSAEVEFVR RQADELIKTF GGLVSNLNQF CDLIKDGGYD GIISMN*
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Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KM663988 | 2e-81 | KM663988.1 Ananas bracteatus clone 48686 microsatellite sequence. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT4G31270.1 | 8e-26 | sequence-specific DNA binding transcription factors |