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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Aco007900.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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| Family |
C2H2 |
| Protein Properties |
Length: 406aa MW: 46779.4 Da PI: 8.4122 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aco007900.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 15.1 | 6.7e-05 | 145 | 169 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
++C+ C k Fs++s LkrH +H
Aco007900.1 145 HVCHyeGCEKKFSDRSKLKRHFLVH 169
79*******************8877 PP
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| 2 | zf-C2H2 | 18.3 | 6.4e-06 | 175 | 199 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23
+kC+ Cgk Fs + nL++H rtH
Aco007900.1 175 FKCHyeGCGKAFSLPFNLTNHFRTH 199
89**********************8 PP
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| 3 | zf-C2H2 | 17.8 | 9e-06 | 205 | 230 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
++Cp C+++F++ + L++Hi+t H
Aco007900.1 205 HVCPhpECSRRFTDEYKLQSHIKTrH 230
79**********************99 PP
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| 4 | zf-C2H2 | 15.4 | 5.3e-05 | 263 | 288 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23
++Cp C k + +++ L+ H+r+ H
Aco007900.1 263 FVCPyeGCRKAYIHRYKLNLHLRKeH 288
89**********************99 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:3.30.160.60 | 4.4E-8 | 111 | 140 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 5.1E-7 | 114 | 169 | No hit | No description |
| SMART | SM00355 | 0.0033 | 116 | 140 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 11.032 | 116 | 145 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 118 | 140 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 1.9E-11 | 142 | 165 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.0051 | 145 | 169 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 13.692 | 145 | 174 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 147 | 169 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 6.22E-14 | 156 | 209 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 5.6E-17 | 166 | 197 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| PROSITE profile | PS50157 | 12.237 | 175 | 204 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.0016 | 175 | 199 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE pattern | PS00028 | 0 | 177 | 199 | IPR007087 | Zinc finger, C2H2 |
| Gene3D | G3DSA:3.30.160.60 | 2.0E-8 | 198 | 228 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.0083 | 205 | 230 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.328 | 205 | 230 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 207 | 230 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 5.04E-5 | 259 | 286 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 1.9E-8 | 261 | 286 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SMART | SM00355 | 0.0091 | 263 | 288 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 10.221 | 263 | 293 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 265 | 288 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 406 aa
Download sequence Send
to blast |
MQNPNPLPKT LNPKTLIPPP IPLVIGLDPS EHEAKERGAG SRRAEMKPHA KGSPSGNRPI 60
GRDRPPAARW VKEWFVSPSP SLRSHPRKDK LEALRETSKK PEVEDPKPKP TTERLYLCSY 120
VGCGKIFVDF RALDKHVQTH EERKHVCHYE GCEKKFSDRS KLKRHFLVHT GKKPFKCHYE 180
GCGKAFSLPF NLTNHFRTHC AENYHVCPHP ECSRRFTDEY KLQSHIKTRH EKYAVMHKPK 240
QTPQEKLHGI PNTPASASCD RPFVCPYEGC RKAYIHRYKL NLHLRKEHPD HDPPQNGKPS 300
PTTSNAFDRA SDQDAYVATY GAPKSFKRRE PGKEEHNKKK SGPEVVYGEG YDLKIRTVNN 360
TVEKQRQSEE RYDGDDRSEE TEEEGEMFDD LEYEEVNNEE TEDED*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
| Publications
? help Back to Top |
- Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
DNA Res., 2001. 8(6): p. 285-90
[PMID:11853315] - Li T,Wu XY,Li H,Song JH,Liu JY
A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
Mol Plant, 2016. 9(5): p. 650-661
[PMID:26961720] - Wu XY,Li T
A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
Front Plant Sci, 2017. 8: p. 323
[PMID:28348572]
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