PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aco007874.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

C2H2

Protein Properties

Length: 395aa MW: 43369.1 Da PI: 7.4599

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco007874.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.8	4.3e-06	167	189	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ Cg++F ++++L+ H+ + H Aco007874.1 167 SCNECGEVFINPEDLEIHQANnH 189 8******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.058	166	194	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	166	189	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.15E-17	191	392	No hit	No description
Gene3D	G3DSA:3.90.228.10	2.0E-4	192	309	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
Gene3D	G3DSA:3.90.228.10	1.2E-7	328	393	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MGEATKSYKP NNNGEKQTHE RTHKAPSWVV LKILSPCRYC HVSEGKKEEE KKKDIEEKKD 60 NLGAKMMVKG PGTNCSNRYL KGPCDEAINN GGASTCSSFN SSSASASASA SVTSASSSSL 120 CSSFSSLGGS FRGVHMKKLS GCYECHLEAD TFNCVSKDHA KITTICSCNE CGEVFINPED 180 LEIHQANNHA VSELGPEDSS RSIVEIIFQS SWLNTQHPMC KIDRILKVNN SPKTTVKFEE 240 YRNNIKGQAI KLSEKYPRFA ADGNELLRFH CTTLACSLGL DGSTNLCHSI DRCDVCEIIR 300 YGFRFDELGR ITLSSRAREI SPISCGGEAK RAMFVCRVIA GRVKKSNCST VWECESIITS 360 PEDFDSMVGS NSEELIVFNP RAILPCFVVI YSFC*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MGEATKSYKP NNNGEKQTHE RTHKAPSWVV LKILSPCRYC HVSEGKKEEE KKKDIEEKKD  60
NLGAKMMVKG PGTNCSNRYL KGPCDEAINN GGASTCSSFN SSSASASASA SVTSASSSSL  120
CSSFSSLGGS FRGVHMKKLS GCYECHLEAD TFNCVSKDHA KITTICSCNE CGEVFINPED  180
LEIHQANNHA VSELGPEDSS RSIVEIIFQS SWLNTQHPMC KIDRILKVNN SPKTTVKFEE  240
YRNNIKGQAI KLSEKYPRFA ADGNELLRFH CTTLACSLGL DGSTNLCHSI DRCDVCEIIR  300
YGFRFDELGR ITLSSRAREI SPISCGGEAK RAMFVCRVIA GRVKKSNCST VWECESIITS  360
PEDFDSMVGS NSEELIVFNP RAILPCFVVI YSFC*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020111152.1	0.0	uncharacterized protein LOC109726128
TrEMBL	A0A199UIK8	0.0	A0A199UIK8_ANACO; Uncharacterized protein (Fragment)
STRING	GSMUA_Achr8P30300_001	1e-119	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2633	38	80

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75710.1	5e-80	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	Aco007874.1