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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco007521.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | E2F/DP | ||||||||
Protein Properties | Length: 191aa MW: 20904.7 Da PI: 6.6292 | ||||||||
Description | E2F/DP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | E2F_TDP | 72 | 6.4e-23 | 126 | 187 | 1 | 67 |
E2F_TDP 1 rkeksLrlltqkflkllekseegivtlnevakeLvsedvknkrRRiYDilNVLealnliekkeknei 67 r+e sL+llt++f++ll++se+g ++ln va+ L +v ++RRiYDi+NVLe+++liek+ kn + Aco007521.1 126 RYECSLGLLTKRFITLLHQSEDGFLDLNRVADVL---KV--QKRRIYDITNVLEGVGLIEKSLKNTV 187 6789******************************...88..********************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.4E-23 | 123 | 187 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 6.46E-16 | 126 | 187 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM01372 | 1.1E-24 | 126 | 190 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Pfam | PF02319 | 5.4E-20 | 129 | 187 | IPR003316 | E2F/DP family, winged-helix DNA-binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MAGPHLHLRS PSPCPIPRPA AANRHFPLFP AAAATAAAGE DEDDRFPPRP PPETPIKGAG 60 KIKVETGYLE VERHEEEATF NVLSTGPEAM FQGEPKPLEH QSFVPDTHGP LEGVAANEVR 120 SPNNCRYECS LGLLTKRFIT LLHQSEDGFL DLNRVADVLK VQKRRIYDIT NVLEGVGLIE 180 KSLKNTVSRK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1cf7_A | 2e-21 | 125 | 190 | 6 | 72 | PROTEIN (TRANSCRIPTION FACTOR E2F-4) |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 158 | 164 | LKVQKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020093863.1 | 1e-137 | transcription factor E2FB-like isoform X1 | ||||
Refseq | XP_020093864.1 | 1e-137 | transcription factor E2FB-like isoform X1 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP625 | 37 | 148 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22220.2 | 1e-29 | E2F transcription factor 1 |
Link Out ? help Back to Top | |
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Phytozome | Aco007521.1 |