PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

LBD

Protein Properties

Length: 237aa MW: 25417.8 Da PI: 6.6678

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco007102.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	131.7	3.1e-41	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe +r da++slvyeA+ r+rdPvyG++g i++lqqq++ l+ael++++ Aco007102.1 42 PCAACKLLRRRCAQECPFSPYFSPHEPNKFASVHKVFGASNVSKMLMEVPEPQRADAANSLVYEANLRLRDPVYGCMGAIMALQQQVQALEAELEAIR 139 7**********************************************************************************************998 PP DUF260 99 ee 100 +e Aco007102.1 140 AE 141 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.529	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-41	42	139	IPR004883	Lateral organ boundaries, LOB

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MSSERERIDE VGKKIKRESD AVPADRMGRG IGPAGALNTI TPCAACKLLR RRCAQECPFS 60 PYFSPHEPNK FASVHKVFGA SNVSKMLMEV PEPQRADAAN SLVYEANLRL RDPVYGCMGA 120 IMALQQQVQA LEAELEAIRA EILKHKYRQA GSSLISNPHA AALLVHPPPE EVSVAAPPPL 180 PPLPPAASSS SVYTAPPSNS TEYSSITTNE NGQDDISRLE LSGSSRVEWS SLGNSI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	8e-42	42	152	11	121	LOB family transfactor Ramosa2.1
5ly0_B	8e-42	42	152	11	121	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020114182.1	1e-153	LOB domain-containing protein 15 isoform X1
Swissprot	Q8L5T5	2e-77	LBD15_ARATH; LOB domain-containing protein 15
TrEMBL	M0RQG3	1e-102	M0RQG3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr11P08330_001	1e-103	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	3e-72	LOB domain-containing protein 15

Link Out ? help Back to Top
Phytozome	Aco007102.1

Publications ? help Back to Top
Ohashi-Ito K,Iwamoto K,Fukuda H LOB DOMAIN-CONTAINING PROTEIN 15 Positively Regulates Expression of VND7, a Master Regulator of Tracheary Elements. Plant Cell Physiol., 2018. 59(5): p. 989-996 [PMID:29444288]