![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco007102.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 237aa MW: 25417.8 Da PI: 6.6678 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 131.7 | 3.1e-41 | 42 | 141 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++pe +r da++slvyeA+ r+rdPvyG++g i++lqqq++ l+ael++++ Aco007102.1 42 PCAACKLLRRRCAQECPFSPYFSPHEPNKFASVHKVFGASNVSKMLMEVPEPQRADAANSLVYEANLRLRDPVYGCMGAIMALQQQVQALEAELEAIR 139 7**********************************************************************************************998 PP DUF260 99 ee 100 +e Aco007102.1 140 AE 141 76 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.529 | 41 | 142 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.0E-41 | 42 | 139 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 237 aa Download sequence Send to blast |
MSSERERIDE VGKKIKRESD AVPADRMGRG IGPAGALNTI TPCAACKLLR RRCAQECPFS 60 PYFSPHEPNK FASVHKVFGA SNVSKMLMEV PEPQRADAAN SLVYEANLRL RDPVYGCMGA 120 IMALQQQVQA LEAELEAIRA EILKHKYRQA GSSLISNPHA AALLVHPPPE EVSVAAPPPL 180 PPLPPAASSS SVYTAPPSNS TEYSSITTNE NGQDDISRLE LSGSSRVEWS SLGNSI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 8e-42 | 42 | 152 | 11 | 121 | LOB family transfactor Ramosa2.1 |
5ly0_B | 8e-42 | 42 | 152 | 11 | 121 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020114182.1 | 1e-153 | LOB domain-containing protein 15 isoform X1 | ||||
Swissprot | Q8L5T5 | 2e-77 | LBD15_ARATH; LOB domain-containing protein 15 | ||||
TrEMBL | M0RQG3 | 1e-102 | M0RQG3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr11P08330_001 | 1e-103 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2630 | 38 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G40470.1 | 3e-72 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco007102.1 |
Publications ? help Back to Top | |||
---|---|---|---|
|