![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco007039.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | S1Fa-like | ||||||||
Protein Properties | Length: 66aa MW: 7340.91 Da PI: 11.6132 | ||||||||
Description | S1Fa-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | S1FA | 104.4 | 6.2e-33 | 1 | 56 | 15 | 70 |
S1FA 15 livllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 ++vllvvgg+ll+fl gny+ly+ya+k+lP rkkkPvskkklkre+lkqGv++PG+ Aco007039.1 1 MVVLLVVGGVLLLFLAGNYALYTYAKKTLPSRKKKPVSKKKLKRERLKQGVSAPGD 56 89****************************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04689 | 3.7E-31 | 1 | 56 | IPR006779 | DNA binding protein S1FA |
ProDom | PD019013 | 0.009 | 14 | 56 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 66 aa Download sequence Send to blast |
MVVLLVVGGV LLLFLAGNYA LYTYAKKTLP SRKKKPVSKK KLKRERLKQG VSAPGDKDRN 60 RRKLT* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104121.2 | 3e-22 | DNA-binding protein S1FA | ||||
Refseq | XP_024026346.1 | 3e-22 | DNA-binding protein S1FA | ||||
TrEMBL | A0A199W2E1 | 3e-29 | A0A199W2E1_ANACO; DNA-binding protein S1FA2 | ||||
STRING | XP_010104121.1 | 9e-22 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5154 | 35 | 63 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco007039.1 |