PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco006567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 221aa MW: 22901 Da PI: 12.1264 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.6e-20 | 29 | 78 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +gr++AeIrdp k+ r++lg+f+tae+Aa+a++aa+++++g Aco006567.1 29 RYRGVRKRP-WGRFAAEIRDPA---KKSRVWLGTFDTAEDAARAYDAAALQFRG 78 69*******.**********83...36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 24.513 | 29 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 8.9E-14 | 29 | 78 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.26E-17 | 29 | 85 | No hit | No description |
SMART | SM00380 | 1.8E-35 | 29 | 92 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.27E-22 | 29 | 86 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 8.1E-32 | 29 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 30 | 41 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.9E-11 | 52 | 68 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence Send to blast |
MVEEMKASTK KPRVARSGGG GAAAEGGVRY RGVRKRPWGR FAAEIRDPAK KSRVWLGTFD 60 TAEDAARAYD AAALQFRGPK AKTNFAAAAA AAAAASAAAP SSPPAAAPPR RAPLRPPSLD 120 LELALPSRAS PPRGAQRVPL LRPDRPIRQE RRRRRRRGGK RVRRRANGGG AEGAKGFGGG 180 GGGGAVSDSD SSSVIDSPAR GFAFEIDLNL PPPPEVAAAK * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 7e-22 | 27 | 85 | 3 | 62 | ATERF1 |
3gcc_A | 7e-22 | 27 | 85 | 3 | 62 | ATERF1 |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 156 | RQERRRRRRR |
2 | 150 | 156 | RRRRRRR |
3 | 150 | 164 | RRRRRRRGGKRVRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM665477 | 1e-121 | KM665477.1 Ananas bracteatus clone 50627b microsatellite sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020102436.1 | 1e-146 | ethylene-responsive transcription factor 8-like | ||||
TrEMBL | A0A199UPM1 | 2e-47 | A0A199UPM1_ANACO; Ethylene-responsive transcription factor 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44210.1 | 2e-15 | erf domain protein 9 |
Link Out ? help Back to Top | |
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Phytozome | Aco006567.1 |