PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB_related

Protein Properties

Length: 165aa MW: 18701.2 Da PI: 6.6773

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco006187.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	56.6	6e-18	90	137	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT eEd++l+++++ +G g W+ ar g++Rt+k+c++rw++yl Aco006187.1 90 KGPWTVEEDLILANYIANHGEGVWNNLARSAGLNRTGKSCRLRWLNYL 137 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-22	83	140	IPR009057	Homeodomain-like
PROSITE profile	PS51294	20.891	85	141	IPR017930	Myb domain
SMART	SM00717	9.9E-14	89	139	IPR001005	SANT/Myb domain
Pfam	PF00249	1.6E-16	90	137	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	9.84E-22	91	164	IPR009057	Homeodomain-like
CDD	cd00167	4.04E-10	92	137	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.1E-8	141	164	IPR009057	Homeodomain-like
PROSITE profile	PS51294	8.386	142	164	IPR017930	Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MNTSIHNSVG AQNLCLELTK TYDEGEYALT SLYFLYKTHY KPLILLPHPP LSLSLSLSLS 60 LSLSLSLSMG EEGNNMEKRI NSSEETEVRK GPWTVEEDLI LANYIANHGE GVWNNLARSA 120 GLNRTGKSCR LRWLNYLRPD VRRGNITQEE EQLIIELHSR WGNR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-14	87	164	24	100	MYB TRANSFORMING PROTEIN
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020105491.1	1e-116	myb-related protein 305 isoform X1
Swissprot	P81391	8e-48	MYB05_ANTMA; Myb-related protein 305
TrEMBL	A0A199UEZ3	2e-63	A0A199UEZ3_ANACO; Myb-related protein 305
STRING	XP_008800726.1	4e-54	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP198	38	330

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G40350.1	1e-41	myb domain protein 24

Link Out ? help Back to Top
Phytozome	Aco006187.1

Publications ? help Back to Top
Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C Expression patterns of myb genes from Antirrhinum flowers. Plant Cell, 1991. 3(2): p. 115-25 [PMID:1840903]