PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aco006125.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

CPP

Protein Properties

Length: 120aa MW: 13401.3 Da PI: 8.0648

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco006125.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	38.7	2.1e-12	11	48	5	42
TCR 5 gCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 +C+C+ks+Cl+ YC C +++++C+e+C C++C+N++e+ Aco006125.1 11 NCKCEKSQCLQFYCGCLSRERYCNEHCGCKNCHNNKEH 48 7**********************************986 PP
2	TCR	23.2	1.4e-07	73	93	2	22
TCR 2 ekkgCnCkkskClkkYCeCfa 22 +k gCnC+ks+C+k+YCeC++ Aco006125.1 73 RKSGCNCEKSQCIKRYCECYK 93 578*****************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.5E-4	7	48	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	18.047	8	114	IPR005172	CRC domain
Pfam	PF03638	5.1E-9	11	46	IPR005172	CRC domain
SMART	SM01114	0.03	72	100	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	3.5E-4	75	93	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 120 aa Download sequence Send to blast
TCKKAAVEGP NCKCEKSQCL QFYCGCLSRE RYCNEHCGCK NCHNNKEHMA EVSDVIARAE 60 ISNRHAINAD RTRKSGCNCE KSQCIKRYCE CYKVCCSLVA YFDTSNVGCS SLSMHSYLV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10159	29	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04850.1	2e-13	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Phytozome	Aco006125.1