PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco006074.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 309aa    MW: 33333.7 Da    PI: 5.1676
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco006074.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58.2e-1969118255
          AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  +++GVr+++ +g+++AeIrdp+    r  r++lg+f+taeeAa  ++ a+++l+g
  Aco006074.1  69 KFRGVRRRP-WGKYAAEIRDPV----RgVRVWLGTFDTAEEAAMVYDSAALQLRG 118
                  89*******.**********63....56*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-2968126IPR001471AP2/ERF domain
PROSITE profilePS5103223.14369126IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-2169126IPR016177DNA-binding domain
PfamPF008474.3E-1269118IPR001471AP2/ERF domain
SMARTSM003802.2E-3369132IPR001471AP2/ERF domain
CDDcd000184.17E-2769125No hitNo description
PRINTSPR003674.4E-107081IPR001471AP2/ERF domain
PRINTSPR003674.4E-1092108IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTRPRTLRIF WNDPDATDTS GDEDEGRRVG RVVGDRRGGG PVLRRRRRPG ARKKTAAAAQ  60
TGAGAGDRKF RGVRRRPWGK YAAEIRDPVR GVRVWLGTFD TAEEAAMVYD SAALQLRGPR  120
AATNFSSPAA AAAAPPPEKA PAPEKKAQAP PQGGDRGLAP AANSGGYDSG GELHALPSPT  180
SVLRKVSSLS SFSEENPRAY YNYYYEEDEE ERKEGEVTGE GEWGKLIKAS EGALYDDFFG  240
GGYDYYGGVS EPRIYEAATR FGFYAGDSNE AAALGSGWGD LGSVTWQGDD YFREIGDLFP  300
IDPLPAMF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A9e-2065125162ATERF1
3gcc_A9e-2065125162ATERF1
5wx9_A1e-1962125771Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14248LRRRRRP
24353RRRRRPGARKK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009416389.14e-75PREDICTED: ethylene-responsive transcription factor CRF1-like
RefseqXP_009416390.14e-75PREDICTED: ethylene-responsive transcription factor CRF1-like
TrEMBLA0A199VZZ01e-125A0A199VZZ0_ANACO; Ethylene-responsive transcription factor CRF4
STRINGGSMUA_Achr9P05260_0011e-74(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP16903697
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.15e-27cytokinin response factor 1