PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco005509.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 253aa MW: 26786.8 Da PI: 9.5748 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.7 | 3.8e-10 | 116 | 146 | 2 | 36 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkf 36 y+GVr++ +g+WvAeIr p + r r++lg++ Aco005509.1 116 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTY 146 59****999.**********954...5*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.74E-13 | 115 | 146 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.1E-15 | 116 | 149 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.656 | 116 | 146 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-7 | 116 | 160 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-9 | 116 | 149 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 7.9E-6 | 117 | 128 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.6E-5 | 117 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 7.9E-6 | 139 | 155 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MERAKRESLA EIASFPSDIG SASSAVSSVL LSGTNALDSI FSHLPPPLPP PPLRPFLPPL 60 SAAAAPEQLG SGVYLRQTEL LRRLGVALAR AHPCYAHRGG FGGAAAAAAS ARGTKLYRGV 120 RQRQWGKWVA EIRLPQNRVR VWLGTYRPAK PNPKPNTNPN PSKKDPPAND DSNNNNSNHN 180 NNQSINNSHA VVAPSPSQEC PANTSSWSSS SSSSSTSSES AATVGFAEMD GECSLARMPS 240 FDPELIWEVL AN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC104284 | 3e-36 | AC104284.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1735_C10, complete sequence. | |||
GenBank | AP014961 | 3e-36 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. | |||
GenBank | CP012613 | 3e-36 | CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence. | |||
GenBank | CT837611 | 3e-36 | CT837611.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA042N08, full insert sequence. | |||
GenBank | CT841687 | 3e-36 | CT841687.1 Oryza rufipogon (W1943) cDNA clone: ORW1943C102K07, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020098196.1 | 0.0 | ethylene-responsive transcription factor ERF061 | ||||
Swissprot | Q9C7W2 | 4e-20 | ERF61_ARATH; Ethylene-responsive transcription factor ERF061 | ||||
TrEMBL | A0A199W8E8 | 2e-54 | A0A199W8E8_ANACO; Ethylene-responsive transcription factor ERF061 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP8828 | 28 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22190.1 | 2e-15 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco005509.1 |
Publications ? help Back to Top | |||
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