PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005389.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family MYB
Protein Properties Length: 205aa    MW: 23806.4 Da    PI: 5.1215
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005389.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.62.8e-182471148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l+++++ +G g W+  ar  g++Rt+k+c++rw++yl
      Aco005389.1 24 KGPWTLEEDLILINYITHHGEGVWNNLARSAGLNRTGKSCRLRWLNYL 71
                     79********************************************97 PP
2Myb_DNA-binding52.79.5e-1777120146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE+ l+ d+++++G++ W++Iar ++ gRt++++k++w++
      Aco005389.1  77 RGNITPEEQMLIMDLHARWGNR-WSKIARQLP-GRTDNEIKNYWRT 120
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-231774IPR009057Homeodomain-like
PROSITE profilePS5129416.2081971IPR017930Myb domain
SuperFamilySSF466893.18E-3022118IPR009057Homeodomain-like
SMARTSM007177.0E-142373IPR001005SANT/Myb domain
PfamPF002497.0E-162471IPR001005SANT/Myb domain
CDDcd001671.39E-102671No hitNo description
PROSITE profilePS5129424.3972126IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-2475127IPR009057Homeodomain-like
SMARTSM007178.1E-1476124IPR001005SANT/Myb domain
PfamPF002499.6E-1577120IPR001005SANT/Myb domain
CDDcd001671.16E-1081120No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGEEANYNNM DRMINSSQEA EVRKGPWTLE EDLILINYIT HHGEGVWNNL ARSAGLNRTG  60
KSCRLRWLNY LRPDVRRGNI TPEEQMLIMD LHARWGNRWS KIARQLPGRT DNEIKNYWRT  120
RIQKKVKHCE HDYQNVMLTD EAIPSTSTSQ LNSVEDGAST QPNYPEYNMI DAEALEAPQF  180
SSHESSDNFW TVDDFWSMQP LNCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-262112624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020099074.11e-153myb-related protein 305
SwissprotP813911e-79MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A2H3YLY21e-109A0A2H3YLY2_PHODC; myb-related protein 305-like
STRINGXP_008800726.11e-110(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19838330
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.19e-75myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]