PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco005342.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family bHLH
Protein Properties Length: 275aa    MW: 31159 Da    PI: 4.7745
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco005342.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.40.00062202571355
                  HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  R+++++    Lre++P        +l+  ++L +Av+Y+k+L+
  Aco005342.1 220 REKMRKMVRVLREIIPGG-----DRLDAPAVLDEAVRYLKYLK 257
                  7889999999******94.....59****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.163207256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.0043214262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.2E-7218266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-5218265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MHIEIDLKRY RTVEEVGEII MNVRIIAYCQ LMQVCQGDAR ILNGKGFLSH EYELGCTQNS  60
ALNDHYPYSV PFPPQFLSPL SGLEFQPLEN CPKNFIIFDH TYDKGSVMFH PALVRKLGSP  120
NLDLYPSHHA EKKGKISSRK NDICQDKFSS SFEEDSKDID ALLCSDEEGN DGKKDDDDDD  180
DDDDVVSTGR TPDFSCSGKH EPSFSQDFTF DGSISKEKKR EKMRKMVRVL REIIPGGDRL  240
DAPAVLDEAV RYLKYLKVEV KKLGLQNFDD QSCD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6671521e-159KM667152.1 Ananas bracteatus clone 52547b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020098866.11e-175transcription factor bHLH144-like
TrEMBLA0A199UKG31e-178A0A199UKG3_ANACO; Transcription factor bHLH144
STRINGGSMUA_Achr10P15220_0018e-71(Musa acuminata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.24e-18bHLH family protein