PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004939.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family G2-like
Protein Properties Length: 275aa    MW: 30545.4 Da    PI: 9.7045
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004939.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.45.6e-32140193255
      G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                  pr+rWt++LH++Fv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Aco004939.1 140 PRMRWTTTLHSHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 193
                  9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.0E-15137194IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-28138194IPR009057Homeodomain-like
TIGRFAMsTIGR015572.2E-23140193IPR006447Myb domain, plants
PfamPF002491.7E-7141192IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MAMAKESISS STTTTTFPDL SLQISPPSSL TIDESMRKNL LREDSGSSGS EVSHELGFLH  60
RPDPNPNPSL GEPQLSLRFE APATDQVHGR MYHQLVQQHL DNNNNNSFHD RDHHLHHPQI  120
YGFKRNSRPG HGGKRSVRAP RMRWTTTLHS HFVHAVELLG GHERATPKSV LELMNVKDLT  180
LAHVKSHLQM YRTVKSTDRG TGQGQIDMGL NQRTGRGDQV EGGVGVLPCD TAEINTSYKP  240
LTTTTTTTPT PPTTLLKSPR EWKKKGMLFI PLME*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A2e-16141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B2e-16141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A2e-16141195357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-16141195357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-16141195357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-16141195357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A2e-16141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C2e-16141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D2e-16141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F2e-16141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H2e-16141195458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J2e-16141195458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6632980.0KM663298.1 Ananas bracteatus clone 47629b microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020093020.10.0probable transcription factor KAN4
TrEMBLA0A2H3Y2U22e-76A0A2H3Y2U2_PHODC; probable transcription factor KAN4
STRINGXP_008792614.13e-77(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP65543750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.28e-48G2-like family protein