PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004935.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family B3
Protein Properties Length: 698aa    MW: 78544.6 Da    PI: 9.0446
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004935.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.12.7e-1731119198
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                  ffkv+     ++++ +++pkkf+++++g+   s  + l+++sg  W++ +  +k+++ ++l++GW eF  a++++ +D + F+ +g+s+f   v +++
  Aco004935.1  31 FFKVM--VEDFTKC-MSMPKKFVDNFNGQ--ISNVVDLKTPSGDIWKIGV--TKSQDNIILQSGWTEFIAAHRIEKNDLLFFTCNGNSSF--EVAICD 119
                  78888..7788888.********998888..7889***************..*******************************9999999..888887 PP
2B346.28.5e-15288373593
                  -..-H.HHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   5 ltpsd.vlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  + ps+ + k++ l +pk fa++h   +++s  ++l+   + ++W+  +i+  + ++  + +GW++Fv++n+L+ gD+++F+ ++ +++ l+
  Aco004935.1 288 MYPSNaAIKNCFLNIPKCFAKAHL--PRRSERIILKIpNKRETWTCSYIFATRLQG--IYGGWSDFVHDNNLRKGDTCLFEQMKGMKT-LT 373
                  555541468899***********5..3466678888834559********999999..569********************6654332.34 PP
3B362.19.1e-204144941399
                  TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
           B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                  ++r+++pk+fa+++++k   s  + l+ +sg+ W+v +  +k++++++l +GWkeFv+a++++e D ++Fkl+g+s+f   v +f++
  Aco004935.1 414 TQRMTIPKNFANRFSEK--ISEVVDLKPPSGNIWQVGV--TKSPDGIILVSGWKEFVEAHRVEESDLLLFKLIGTSSF--EVVIFDA 494
                  579********999755..7789***************..***********************************999..7777775 PP
4B348.91.2e-156136961196
                  HHTT-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEE CS
           B3  11 lksgrlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkv 96 
                   ks+ + +pkkfa++h ++  +s ++ l+ ++g ++W v +i    +++  + +GWk+F+ +n+L+ gD+++F+l+++    +++v++
  Aco004935.1 613 AKSNFVNIPKKFADAHLQP--RSHEIALKIPNGtNKWFVSYILGSDRRG--ICGGWKGFAADNNLRKGDICLFELMKNsGVPTMTVHI 696
                  4677899******999544..6779*****9999*******66555544..668**********************985666666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-1925123IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-1928126IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.60528121IPR003340B3 DNA binding domain
CDDcd100175.55E-1630119No hitNo description
PfamPF023622.9E-1431119IPR003340B3 DNA binding domain
SMARTSM010194.9E-931121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-20280377IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-19280374IPR015300DNA-binding pseudobarrel domain
CDDcd100171.01E-15282377No hitNo description
SMARTSM010196.6E-9284380IPR003340B3 DNA binding domain
PROSITE profilePS5086312.435285380IPR003340B3 DNA binding domain
PfamPF023621.7E-12285376IPR003340B3 DNA binding domain
SuperFamilySSF1019361.1E-21398496IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.677402495IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-20404496IPR015300DNA-binding pseudobarrel domain
SMARTSM010198.7E-13405495IPR003340B3 DNA binding domain
CDDcd100173.83E-17413493No hitNo description
PfamPF023622.0E-17414494IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.5E-22597696IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.61E-21597696IPR015300DNA-binding pseudobarrel domain
CDDcd100176.32E-17600695No hitNo description
SMARTSM010191.6E-8602692IPR003340B3 DNA binding domain
PROSITE profilePS5086313.239603697IPR003340B3 DNA binding domain
PfamPF023628.3E-14614696IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005773Cellular Componentvacuole
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 698 aa     Download sequence    Send to blast
MKKISDKSCK ECEKWEEHFY WNHLDEHKMH FFKVMVEDFT KCMSMPKKFV DNFNGQISNV  60
VDLKTPSGDI WKIGVTKSQD NIILQSGWTE FIAAHRIEKN DLLFFTCNGN SSFEVAICDD  120
SGCEKASPFF AKKDARKTGE GDGATPAQTR NEGNRRRKVI ELCSSGSSSE NDVAPKISRK  180
TLCANSKTAN RIDCDVSSHG GAISGTNEKH KVPSKRPRGR PRKYIESSKG VEHVVKSESQ  240
ESCKCKEETP GSAPYYSSRS LQLTPSQDKK VSKLALALLP NPSFASVMYP SNAAIKNCFL  300
NIPKCFAKAH LPRRSERIIL KIPNKRETWT CSYIFATRLQ GIYGGWSDFV HDNNLRKGDT  360
CLFEQMKGMK TLTLTMFEGF ESCRECREWK EHFYWNHLDK QRTRFYTRMV GDFTQRMTIP  420
KNFANRFSEK ISEVVDLKPP SGNIWQVGVT KSPDGIILVS GWKEFVEAHR VEESDLLLFK  480
LIGTSSFEVV IFDASGHEKA SSLFATKKDP QMGESNAVSV EIISVENIHE VIAISSSTNS  540
SEVHAKPANC GVRRTGLDCG GRPNEREHEL HLELPYRSPP LPDWQEKKLS ALALAARPNP  600
TFVAIMHWSN ITAKSNFVNI PKKFADAHLQ PRSHEIALKI PNGTNKWFVS YILGSDRRGI  660
CGGWKGFAAD NNLRKGDICL FELMKNSGVP TMTVHII*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208217KHKVPSKRPR
2214222KRPRGRPRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00468DAPTransfer from AT4G33280Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020092052.10.0B3 domain-containing protein Os03g0620400
TrEMBLA0A199VWZ90.0A0A199VWZ9_ANACO; B3 domain-containing protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP56234179
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-34B3 family protein