PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Aco004886.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 410aa MW: 44368.7 Da PI: 4.4344 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.1 | 1.1e-18 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +grWvAeI+d + ++ r++lg+f+tae Aa+a+++a+ l+g Aco004886.1 45 RYVGVRQRP-SGRWVAEIKDtV----QKIRVWLGTFDTAEAAARAYDEAACLLRG 94 79*******.7*********55....35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.27E-17 | 44 | 101 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.0E-27 | 45 | 101 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.994 | 45 | 102 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.0E-33 | 45 | 109 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.2E-13 | 45 | 94 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.97E-19 | 45 | 102 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 5.8E-8 | 46 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.8E-8 | 68 | 84 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 410 aa Download sequence Send to blast |
MARKRKCSDD EQEPESFNKA ANRCGATATG VWEGGEARAP GGRKRYVGVR QRPSGRWVAE 60 IKDTVQKIRV WLGTFDTAEA AARAYDEAAC LLRGANTRTN FWPCGRPQQP PALPAKIANL 120 LKLRLKARKE ATAHNKQSRP QEITVREDEI EGRCHGGEDD DDDDDFRIDE FLNDPANCAI 180 DLTLDCETDH DDRRLCDIYD AAEPNCPRNG GGEGPGSEFG HKQGGIGGWE EEEGEEGIMD 240 FELMEEAPLT SYDYSPFEMV AELDGVIEED GEEGEEASAI GAVMKRMKYE RKISASLYAL 300 SGISECLRMR VNGGGIGVEG DHLSSLRNAC RRRAHEEEAK VEGGNSQVSN EVGSSSSSSS 360 FSSSSSSPLM TPGSTSSSPP PPHAASDSNG DGDLTLWSSL DLPPICFVA* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | CP012620 | 6e-45 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_008781042.1 | 1e-86 | ethylene-responsive transcription factor ERN1-like | ||||
TrEMBL | A0A2H3XAR3 | 2e-85 | A0A2H3XAR3_PHODC; ethylene-responsive transcription factor ERN1-like | ||||
STRING | XP_008781042.1 | 4e-86 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5482 | 30 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 5e-22 | related to AP2 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Aco004886.1 |