 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Aco004886.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
| Family |
ERF |
| Protein Properties |
Length: 410aa MW: 44368.7 Da PI: 4.4344 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aco004886.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 59.1 | 1.1e-18 | 45 | 94 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y GVr+++ +grWvAeI+d + ++ r++lg+f+tae Aa+a+++a+ l+g
Aco004886.1 45 RYVGVRQRP-SGRWVAEIKDtV----QKIRVWLGTFDTAEAAARAYDEAACLLRG 94
79*******.7*********55....35**********************99998 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MARKRKCSDD EQEPESFNKA ANRCGATATG VWEGGEARAP GGRKRYVGVR QRPSGRWVAE 60
IKDTVQKIRV WLGTFDTAEA AARAYDEAAC LLRGANTRTN FWPCGRPQQP PALPAKIANL 120
LKLRLKARKE ATAHNKQSRP QEITVREDEI EGRCHGGEDD DDDDDFRIDE FLNDPANCAI 180
DLTLDCETDH DDRRLCDIYD AAEPNCPRNG GGEGPGSEFG HKQGGIGGWE EEEGEEGIMD 240
FELMEEAPLT SYDYSPFEMV AELDGVIEED GEEGEEASAI GAVMKRMKYE RKISASLYAL 300
SGISECLRMR VNGGGIGVEG DHLSSLRNAC RRRAHEEEAK VEGGNSQVSN EVGSSSSSSS 360
FSSSSSSPLM TPGSTSSSPP PPHAASDSNG DGDLTLWSSL DLPPICFVA*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | CP012620 | 6e-45 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
