PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004776.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family NAC
Protein Properties Length: 357aa    MW: 40403.3 Da    PI: 8.7215
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004776.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.13.6e-49231482128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                  +pGfrFhPt+eel+++yL++kvegk++++ e i+ +d+y+++Pw+Lp+ +  ++kew+f+++rd+ky++g+r+nr+t +gyWkatg d+ + ++++++
  Aco004776.1  23 MPGFRFHPTEEELIDFYLRRKVEGKRFNV-ELITFLDLYSYDPWELPALAIIGDKEWFFYVPRDRKYRNGDRPNRVTPTGYWKATGADRMIRAENNRQ 119
                  79***************************.89***************7666799******************************************** PP

          NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                  vglkktLvfy+g+apkg +++W+m+eyrl
  Aco004776.1 120 VGLKKTLVFYSGKAPKGIRSTWIMNEYRL 148
                  ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100554.59722169IPR003441NAC domain
SuperFamilySSF1019411.96E-5522169IPR003441NAC domain
PfamPF023655.0E-2424148IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAIESAMNGE ESRGDGHEND LVMPGFRFHP TEEELIDFYL RRKVEGKRFN VELITFLDLY  60
SYDPWELPAL AIIGDKEWFF YVPRDRKYRN GDRPNRVTPT GYWKATGADR MIRAENNRQV  120
GLKKTLVFYS GKAPKGIRST WIMNEYRLPK SETDLYQKAE ISLCRVYKRS GNDDYSQLTS  180
TLSAKASTSR GSLANRKHLT SHHQVVNFAI HDQGENSSLK IPEIAVGSKT NLPTSMLPKP  240
KVYRSTASVA SLSSTTTTEE DGLSFYHSTN TSGLIPPYSL LNLSTSTMTS TPIDELNKIV  300
GYDQTYNNQP NHFHSLTPQS QLLPFNSLPV SFSTVSDKLW DWNPLPDVGR DYTSFK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-532416919165NO APICAL MERISTEM PROTEIN
1ut4_B2e-532416919165NO APICAL MERISTEM PROTEIN
1ut7_A2e-532416919165NO APICAL MERISTEM PROTEIN
1ut7_B2e-532416919165NO APICAL MERISTEM PROTEIN
4dul_A2e-532416919165NAC domain-containing protein 19
4dul_B2e-532416919165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087980.10.0NAC domain-containing protein 35-like
TrEMBLA0A199UTP50.0A0A199UTP5_ANACO; Protein FEZ
STRINGXP_008804076.11e-173(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77063650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.23e-96NAC domain containing protein 35