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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco004608.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | SBP | ||||||||
Protein Properties | Length: 369aa MW: 40356.3 Da PI: 8.386 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 131.5 | 2.8e-41 | 96 | 171 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 C v+gC+adls+++eyhrrhkvCe+hsk+pvvlv g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q Aco004608.1 96 CLVDGCKADLSKCREYHRRHKVCEAHSKTPVVLVGGQEQRFCQQCSRFHLLVEFDEVKRSCRKRLDGHNRRRRKPQ 171 **************************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 1.1E-34 | 89 | 157 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.317 | 93 | 170 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 3.73E-39 | 94 | 175 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.1E-30 | 96 | 169 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MDWDLRMPPW DLADVLNHNP QPPPGFGGSG GSRTDCSVDL KLGGGSGDLG PAHHHKFQSK 60 ASVSAAMAPP PPPSSSSSGP PKRPRTHGSG GPTPSCLVDG CKADLSKCRE YHRRHKVCEA 120 HSKTPVVLVG GQEQRFCQQC SRFHLLVEFD EVKRSCRKRL DGHNRRRRKP QLDHVNSGGF 180 FVNHQGTRLS SYPQIFPTVR SEPNWTGLMK SENNTSFCVN MNRQPLHLSE NYNRERRQFP 240 FLQELGLAPF KTVTPPESSK MFSDCALSLL SSSPAQQPSD AINSTAQIVR QPDHDQIPIG 300 QPLLSSSPLY GVPHRFPCSQ VPDGVSAAGY SCPAVANEAE IHYEGMFHCG SEGLPSYGAS 360 QTLPFSWQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 1e-27 | 88 | 169 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 152 | 169 | KRSCRKRLDGHNRRRRKP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020087801.1 | 0.0 | squamosa promoter-binding-like protein 16 | ||||
Swissprot | Q6YZE8 | 1e-69 | SPL16_ORYSJ; Squamosa promoter-binding-like protein 16 | ||||
TrEMBL | A0A199WA29 | 0.0 | A0A199WA29_ANACO; Squamosa promoter-binding-like protein 16 | ||||
STRING | XP_008806431.1 | 1e-117 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1755 | 37 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50670.1 | 7e-47 | SBP family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco004608.1 |