PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aco004559.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

bHLH

Protein Properties

Length: 425aa MW: 47015.1 Da PI: 7.3884

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco004559.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29.4	1.5e-09	214	261	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq Aco004559.1 214 SHSLAERVRREKISQRMKLLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 261 8***********************9....677***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.23E-17	208	280	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.33E-10	208	265	No hit	No description
PROSITE profile	PS50888	15.535	210	260	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.6E-17	210	278	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	214	261	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	8.3E-11	216	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 425 aa Download sequence Send to blast
MNCGDQLPQF FLNLNCDHDL LGQFGAEISS QHPYIGSISP NLNPSPPPPL TMTHLDQLFP 60 DPGFAERAAR LSSFDARNYR AFASRFGLPE IGKAPIDAEE SSVSDPPSAE CFHSPSESNP 120 KKRKAAAAKS RGKEAPLVNS PKSSLNVLEE KGLERKRCRL GESDQKIEEE DSIKHKEAQN 180 GAQKQGKEKN NAKPAEPPKD YIHVRARRGQ ATDSHSLAER VRREKISQRM KLLQDLVPGC 240 NKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPQLDF TNLPNLLSKD MHQNTGPFLN 300 PVFPLETSGA AFSYTDHPHQ EGNILHSMNQ LDPSLSQSMS PHQLLNGIGN ASLQVGNMWE 360 DDLQSVVQMD IAQNQDVVVS SQSFHAVELQ CNKLVQLKKG GANITNTPFK MLKREKKSAR 420 DVEL*

Sequence ? help Back to Top

Protein Sequence Length: 425 aa Download sequence Send to blast

MNCGDQLPQF FLNLNCDHDL LGQFGAEISS QHPYIGSISP NLNPSPPPPL TMTHLDQLFP  60
DPGFAERAAR LSSFDARNYR AFASRFGLPE IGKAPIDAEE SSVSDPPSAE CFHSPSESNP  120
KKRKAAAAKS RGKEAPLVNS PKSSLNVLEE KGLERKRCRL GESDQKIEEE DSIKHKEAQN  180
GAQKQGKEKN NAKPAEPPKD YIHVRARRGQ ATDSHSLAER VRREKISQRM KLLQDLVPGC  240
NKVTGKAVML DEIINYVQSL QRQVEFLSMK LATVNPQLDF TNLPNLLSKD MHQNTGPFLN  300
PVFPLETSGA AFSYTDHPHQ EGNILHSMNQ LDPSLSQSMS PHQLLNGIGN ASLQVGNMWE  360
DDLQSVVQMD IAQNQDVVVS SQSFHAVELQ CNKLVQLKKG GANITNTPFK MLKREKKSAR  420
DVEL*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020089290.1	0.0	transcription factor bHLH78-like
Refseq	XP_020089291.1	0.0	transcription factor bHLH78-like
TrEMBL	A0A199VZ19	0.0	A0A199VZ19_ANACO; Transcription factor bHLH62
STRING	XP_008792945.1	1e-122	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP919	38	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07340.1	8e-61	bHLH family protein

Link Out ? help Back to Top
Phytozome	Aco004559.1