PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco004479.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 452aa    MW: 49470.2 Da    PI: 8.1258
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco004479.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.84e-052343323
                 ETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                 C++Cgk F r  nL+ H r H
  Aco004479.1 23 CEICGKGFQRDQNLQLHRRGH 43
                 *******************88 PP
2zf-C2H212.90.0003397119123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k++  +s+ k H +t+
  Aco004479.1  97 WKCDKCSKRYAVQSDWKAHSKTC 119
                  58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.603.9E-52043IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.28E-72043No hitNo description
PROSITE profilePS5015711.4892143IPR007087Zinc finger, C2H2
SMARTSM003550.0762143IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802343IPR007087Zinc finger, C2H2
SMARTSM003552606292IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.1E-485118IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.28E-792117No hitNo description
SMARTSM0035514097117IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    Send to blast
MDPDAEVIAL SPKTLLATNR FLCEICGKGF QRDQNLQLHR RGHNLPWKLR QRSGKEPRKR  60
VYVCPEKSCV HHNPARALGD LTGIKKHFCR KHGEKKWKCD KCSKRYAVQS DWKAHSKTCG  120
TREYRCDCGT LFSRRDSFIT HRAFCDALAE ETARVSAAVN IANTANFLFT GGGLIGSDML  180
HPLSSNNLKL NISNSDHQGN NNNNNNDEQC RNNGLSLWMG HGLTHTTEPL SANIATTLND  240
VHHMNPMSAH ATLYTDDLFT NTASNGQLHL DHNQLSWLYS GGNKVSSNAS TGEFTNTLKE  300
IETPQSLLTS IPSLFSNQHR STSAPVSDMS ATALLQKAAQ MGVTSSATTP FMIGSFESKS  360
NGTHEALDQE CNKLGEQHHG FFGSNSNPSS NLESIMNGFT GSSPFEMFTA ATMRRHVSLK  420
DDIGGGGGET RDFLGVGSVQ TLCPPSINGW I*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C8e-3693160370Zinc finger protein JACKDAW
5b3h_F8e-3693160370Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that regulates tissue boundaries and asymmetric cell division (PubMed:17785527, PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:17785527, PubMed:25829440). Interacts with the SCR and MGP promoters (PubMed:21935722). Does not show transcription activity by itself, but regulates the transcription of downstream genes through interaction with other transcription factors (PubMed:21935722). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). Positively involved in gibberellic acid (GA) signaling (PubMed:24821766). {ECO:0000269|PubMed:17785527, ECO:0000269|PubMed:21935722, ECO:0000269|PubMed:24821766, ECO:0000269|PubMed:25829440}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00125DAPTransfer from AT1G03840Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by the transcription factor JKD, and down-regulated by SHR, SCR and itself. {ECO:0000269|PubMed:21935722}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1074680.0AK107468.1 Oryza sativa Japonica Group cDNA clone:002-129-B01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020087799.10.0zinc finger protein MAGPIE-like
SwissprotQ9ZWA61e-127IDD3_ARATH; Zinc finger protein MAGPIE
TrEMBLA0A199W4L90.0A0A199W4L9_ANACO; Zinc finger protein MAGPIE
STRINGXP_008783278.11e-177(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.11e-124C2H2 family protein
Publications ? help Back to Top
  1. Muñoz-Strale D,León G
    Identification of two highly specific pollen promoters using transcriptomic data.
    Plant Physiol. Biochem., 2014. 83: p. 292-9
    [PMID:25208507]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]