PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aco004416.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

MYB

Protein Properties

Length: 989aa MW: 110139 Da PI: 4.8397

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco004416.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	58.7	1.3e-18	86	132	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W+++Ede++++ vk++G++ W+tI++ ++ gR +kqc++rw+++l Aco004416.1 86 KGPWSKQEDEIIIQMVKKYGPKKWSTISQALP-GRIGKQCRERWHNHL 132 79****************************.***********97 PP
2	Myb_DNA-binding	45.5	1.7e-14	138	180	1	45
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 + +WT++E+ l++a++ +G++ W+ + ++ gRt++ +k++w+ Aco004416.1 138 KEAWTQDEEIALIHAHQIYGNK-WAELTKFLP-GRTDNAIKNHWN 180 579*****************.*****.*********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	3.915	61	80	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	1.3E-12	64	97	IPR009057	Homeodomain-like
PROSITE profile	PS51294	31.325	81	136	IPR017930	Myb domain
SuperFamily	SSF46689	1.24E-30	83	179	IPR009057	Homeodomain-like
SMART	SM00717	5.7E-18	85	134	IPR001005	SANT/Myb domain
CDD	cd00167	1.34E-15	88	132	No hit	No description
Pfam	PF13921	7.7E-18	89	149	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.9E-25	98	139	IPR009057	Homeodomain-like
PROSITE profile	PS51294	18.782	137	187	IPR017930	Myb domain
SMART	SM00717	8.0E-14	137	185	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-20	140	187	IPR009057	Homeodomain-like
CDD	cd00167	1.07E-10	140	180	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 989 aa Download sequence Send to blast
SSIGWGSGQR YSSEMESDKE TVSERGEAST SVAAHQGSCN NAQRRRPLNG LMNIYLLYLP 60 AECFLDRTDV QCLHRWQKVL NPELVKGPWS KQEDEIIIQM VKKYGPKKWS TISQALPGRI 120 GKQCRERWHN HLNPAINKEA WTQDEEIALI HAHQIYGNKW AELTKFLPGR TDNAIKNHWN 180 SSVKKKLDSY SASGLLSQFQ GLSHIENPSH HIPTSSVTRQ NSEDSGYKFR QEIEDLSECS 240 QASSALVPRS QSSCELSNAD PICDDLEVKP IHNDFEVQDY DFSFCPQEYQ NSIEEITREL 300 PNVPHERSAL EEARDVDNEV EVSQRINTHM ALQQMLDDSL VEDTKKYLEY NGTSSNFYIE 360 NEELRGPKVP ASVTSSDHSF PSDFCQDNSL QYTISTPDMT NSGHLSGISC QHDAYSFEPH 420 RNFGSYTSPL YHVSSSSMLD SSYYQSLTTV VHPSFICPND GKSTGKSDKT ERNHIFPETN 480 NLVQITCPDD GVLKEIDALS DGKQMVVNEE QKDNGALFYE PPRFPSLDIP FVSCDLISSS 540 DDLQQDFSPL GIRQLMRSSM NFSNPFSFSD SPSHDESPDF VLKSAAKSFI CTPSIMKKRQ 600 RELLSPSNDH RADKKTGITV DCELFAISSS ISLTAQFADS CIGDAKAENF ACGSSSNCER 660 MKEEVSAERM EDLCNASGYR KDKDVSEDEK ITVEEPSSIR SETMARQDMS TSASAWKIDS 720 NSTEEEQHAG ILVEYNVNDL LMFSPESGSY PGYSKTGAKY SKHQFRPLDF TSDKCCSTSQ 780 LNFISVLSPS VGKWEGQPPL PATSIQSIQP TEVKVENFGS SIDVDFENLN ILADTPSIKR 840 GIESPSAWKS PWFMNSVLLA PRIETDMTYQ DIGYLMSPGG DGTYDAIGLM RQLSEHTAAA 900 VAEAHEVLAS GSPRIGLEER KSDKKIFPKE KDQSMKAFDM PPKVTAEARV LDFSGCAMPA 960 RTETKKIGIA GTSVSLSSPS SYLLKSCR*

Sequence ? help Back to Top

Protein Sequence Length: 989 aa Download sequence Send to blast

SSIGWGSGQR YSSEMESDKE TVSERGEAST SVAAHQGSCN NAQRRRPLNG LMNIYLLYLP  60
AECFLDRTDV QCLHRWQKVL NPELVKGPWS KQEDEIIIQM VKKYGPKKWS TISQALPGRI  120
GKQCRERWHN HLNPAINKEA WTQDEEIALI HAHQIYGNKW AELTKFLPGR TDNAIKNHWN  180
SSVKKKLDSY SASGLLSQFQ GLSHIENPSH HIPTSSVTRQ NSEDSGYKFR QEIEDLSECS  240
QASSALVPRS QSSCELSNAD PICDDLEVKP IHNDFEVQDY DFSFCPQEYQ NSIEEITREL  300
PNVPHERSAL EEARDVDNEV EVSQRINTHM ALQQMLDDSL VEDTKKYLEY NGTSSNFYIE  360
NEELRGPKVP ASVTSSDHSF PSDFCQDNSL QYTISTPDMT NSGHLSGISC QHDAYSFEPH  420
RNFGSYTSPL YHVSSSSMLD SSYYQSLTTV VHPSFICPND GKSTGKSDKT ERNHIFPETN  480
NLVQITCPDD GVLKEIDALS DGKQMVVNEE QKDNGALFYE PPRFPSLDIP FVSCDLISSS  540
DDLQQDFSPL GIRQLMRSSM NFSNPFSFSD SPSHDESPDF VLKSAAKSFI CTPSIMKKRQ  600
RELLSPSNDH RADKKTGITV DCELFAISSS ISLTAQFADS CIGDAKAENF ACGSSSNCER  660
MKEEVSAERM EDLCNASGYR KDKDVSEDEK ITVEEPSSIR SETMARQDMS TSASAWKIDS  720
NSTEEEQHAG ILVEYNVNDL LMFSPESGSY PGYSKTGAKY SKHQFRPLDF TSDKCCSTSQ  780
LNFISVLSPS VGKWEGQPPL PATSIQSIQP TEVKVENFGS SIDVDFENLN ILADTPSIKR  840
GIESPSAWKS PWFMNSVLLA PRIETDMTYQ DIGYLMSPGG DGTYDAIGLM RQLSEHTAAA  900
VAEAHEVLAS GSPRIGLEER KSDKKIFPKE KDQSMKAFDM PPKVTAEARV LDFSGCAMPA  960
RTETKKIGIA GTSVSLSSPS SYLLKSCR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h88_C	5e-59	58	187	35	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	5e-59	58	187	35	159	MYB PROTO-ONCOGENE PROTEIN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020088075.1	0.0	myb-related protein 3R-1-like isoform X1
Refseq	XP_020088076.1	0.0	myb-related protein 3R-1-like isoform X1
TrEMBL	A0A2H3ZVS8	0.0	A0A2H3ZVS8_PHODC; transcription factor MYB3R-1-like
STRING	XP_008800072.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2495	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32730.1	7e-82	Homeodomain-like protein

Link Out ? help Back to Top
Phytozome	Aco004416.1