 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Aco004061.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 257aa MW: 30072.3 Da PI: 10.4294 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aco004061.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 62 | 9.1e-20 | 83 | 135 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++ +eq+++Le+ Fe+++++ e++++LA+ lgL+ rqV vWFqNrRa++k
Aco004061.1 83 KRRLGTEQVRALERSFEEENKLGPERKAQLARDLGLQPRQVAVWFQNRRARWK 135
456889**********************************************9 PP
|
| 2 | HD-ZIP_I/II | 128.2 | 3.4e-41 | 82 | 173 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
kkrrl +eqv++LE+sFeee+kL perK++lar+LglqprqvavWFqnrRAR+k+kql++dy+aL++++dal+ + ++L++++++L++e+ke
Aco004061.1 82 KKRRLGTEQVRALERSFEEENKLGPERKAQLARDLGLQPRQVAVWFQNRRARWKAKQLDHDYAALRSRHDALRLQCDALRRDKDALAAEIKE 173
9***************************************************************************************9987 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 257 aa
Download sequence Send
to blast |
MLKWLRKGEG CWCWWWWWWW WRGFAAAEAA RNREKVGSLG KDDGAAEEEE GEEEEDQMVV 60
VGAGVIVNTK VMNMGVTTGV AKKRRLGTEQ VRALERSFEE ENKLGPERKA QLARDLGLQP 120
RQVAVWFQNR RARWKAKQLD HDYAALRSRH DALRLQCDAL RRDKDALAAE IKELKARLGN 180
SEMEEEEKEG KKMMEENMDR DKKSNKNKNK DKKSKNKKKV GRFLSKLIVG SERRRKQVDG 240
DQLFHSKTMK EKPSSKW
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 129 | 137 | RRARWKAKQ |
| 2 | 216 | 235 | KKKVGRFLSKLIVGSERRRK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
| UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
| UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KM661997 | 1e-109 | KM661997.1 Ananas bracteatus clone 45223a microsatellite sequence. |
