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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Aco004061.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family |
HD-ZIP |
Protein Properties |
Length: 257aa MW: 30072.3 Da PI: 10.4294 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Aco004061.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 62 | 9.1e-20 | 83 | 135 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
++++ +eq+++Le+ Fe+++++ e++++LA+ lgL+ rqV vWFqNrRa++k
Aco004061.1 83 KRRLGTEQVRALERSFEEENKLGPERKAQLARDLGLQPRQVAVWFQNRRARWK 135
456889**********************************************9 PP
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2 | HD-ZIP_I/II | 128.2 | 3.4e-41 | 82 | 173 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
kkrrl +eqv++LE+sFeee+kL perK++lar+LglqprqvavWFqnrRAR+k+kql++dy+aL++++dal+ + ++L++++++L++e+ke
Aco004061.1 82 KKRRLGTEQVRALERSFEEENKLGPERKAQLARDLGLQPRQVAVWFQNRRARWKAKQLDHDYAALRSRHDALRLQCDALRRDKDALAAEIKE 173
9***************************************************************************************9987 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 257 aa
Download sequence Send
to blast |
MLKWLRKGEG CWCWWWWWWW WRGFAAAEAA RNREKVGSLG KDDGAAEEEE GEEEEDQMVV 60 VGAGVIVNTK VMNMGVTTGV AKKRRLGTEQ VRALERSFEE ENKLGPERKA QLARDLGLQP 120 RQVAVWFQNR RARWKAKQLD HDYAALRSRH DALRLQCDAL RRDKDALAAE IKELKARLGN 180 SEMEEEEKEG KKMMEENMDR DKKSNKNKNK DKKSKNKKKV GRFLSKLIVG SERRRKQVDG 240 DQLFHSKTMK EKPSSKW
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 129 | 137 | RRARWKAKQ |
2 | 216 | 235 | KKKVGRFLSKLIVGSERRRK |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
UniProt | Probable transcription activator that binds to the DNA sequence 5'-CAAT[AT]ATTG-3'. May be involved in the regulation of gibberellin signaling. {ECO:0000269|PubMed:10732669, ECO:0000269|PubMed:18049796}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
UniProt | INDUCTION: By gibberellin. Down-regulated in leaves by drought stress. {ECO:0000269|PubMed:17999151, ECO:0000269|PubMed:18049796}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | KM661997 | 1e-109 | KM661997.1 Ananas bracteatus clone 45223a microsatellite sequence. |