PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Aco004015.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Protein Properties

Length: 209aa MW: 24089.7 Da PI: 9.7656

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco004015.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	52.4	9.5e-17	102	192	1	99
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k +++s+v + +l lpk+f++++ k + t+tl de+g ++e ++ ++ + l++GW++F ++L +gD +vF+l++ ++f +v ++r Aco004015.1 102 FVKLMLHSHVIRGFWLGLPKHFCDSYLPK--HDATITLVDEEGDEFETNY--LAYKAG--LSGGWQGFSVFHELIDGDALVFQLIEPTKF--KVYIIR 191 89**********************433..5579***********..666655..9*********************987777..888887 PP S CS B3 99 k 99 + Aco004015.1 192 A 192 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.5E-19	93	195	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.33E-24	95	195	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	4.32E-26	100	191	No hit	No description
PROSITE profile	PS50863	12.351	102	193	IPR003340	B3 DNA binding domain
SMART	SM01019	2.5E-21	102	193	IPR003340	B3 DNA binding domain
Pfam	PF02362	4.6E-15	102	192	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MAKKRASSYE EVRRRTLEEN KKKMEELNLR HLSVLVRKDA ATPKPSPAKQ RKRRVVEEGV 60 LRRTYRRLNF SDRPYASYES KISAQRKAEE VESQLDPKFP SFVKLMLHSH VIRGFWLGLP 120 KHFCDSYLPK HDATITLVDE EGDEFETNYL AYKAGLSGGW QGFSVFHELI DGDALVFQLI 180 EPTKFKVYII RAGGCDQLMP KEISQVQV*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020104966.1	1e-147	B3 domain-containing protein Os03g0184500-like
Swissprot	Q10QS9	5e-80	Y3845_ORYSJ; B3 domain-containing protein Os03g0184500
TrEMBL	A0A199UPI0	1e-146	A0A199UPI0_ANACO; B3 domain-containing protein
STRING	XP_008788064.1	2e-82	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1756	38	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	2e-47	B3 family protein

Link Out ? help Back to Top
Phytozome	Aco004015.1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]