PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003961.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GRAS
Protein Properties Length: 517aa    MW: 55164.8 Da    PI: 5.6586
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003961.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS158.46.3e-491474832335
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaalkl....fsevsP 89 
                  ++lL  cA a+++ +++++q+l   l elas +gd+++R+a++ ++AL+ rl++s  + ++  +p +++  +      + +e + ++     f+evsP
  Aco003961.1 147 EQLLNPCAVAIEAANFSRVQHLFYVLDELASLSGDANHRVAFHGLRALSFRLFSSAAGASALRRPPSAAAATavpcfaT-TEPKLFRSalikFHEVSP 243
                  689***************************************************8888887664444443333666642.222222224688****** PP

         GRAS  90 ilkfshltaNqaIleavege....ervHiiDfdisqGlQWpaLlqaLasRpeg...ppslRiTgvgspesg....skeeleetgerLakfAeelgvpf 176
                  ++++ + +aN aIl+ +  +    + +H++D+++s+G+QWp+Ll+aL+ Rp+g   pp +R+T+ g++++     ++       + L ++A+++++++
  Aco003961.1 244 WFTLPNALANAAILQTLTLDraqaRPLHVVDLGVSHGVQWPTLLEALTRRPGGgpqPPLVRLTVAGDSAPPgpfsRAPPGYDFSSHLLRYAKSIDLNL 341
                  ***************997664455778************************5545588*********8877899999999****************** PP

         GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe...adhnsesFlerflealeyysalfdsl 271
                  +++        +l  ++L++  gE+l+V+ +++l +        ++ r+++L+ v++l+P++v++++ +   +   ++    +f++  e+ + ++ds+
  Aco003961.1 342 RIDR-----AGSLAGRDLALGAGETLVVCAQFRLGHAG------HDDRTAILRSVRELNPDLVILSDLDgadSAVAGGGSPGGFARGAEMLWRFLDST 428
                  9996.....78999********************9998......445789*****************98532344778999***************** PP

         GRAS 272 eaklpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                  +a +   +  er++vE e  g ++ +  a+egae        e+Wrer+   GF++  ++++a++
  Aco003961.1 429 SAAFKGRDcGERRVVEGE--GARVLE--AAEGAE------GRERWRERMVGLGFREEGFGDEAVE 483
                  777644444888888877..444443..456665......7789************999999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098529.799120502IPR005202Transcription factor GRAS
PfamPF035142.2E-46147483IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042446Biological Processhormone biosynthetic process
GO:2000032Biological Processregulation of secondary shoot formation
Sequence ? help Back to Top
Protein Sequence    Length: 517 aa     Download sequence    Send to blast
MTFDEGADQH HLIEWLEDSV SFLPTFLEEP CAVADEICGY EWWTVDQNQA QLIQTPSTTN  60
LTIPTTTTTT TTTTTSPFLF PLSLSLSLSL SPSNXKGGRW GSRSADGNEE IEESELQRKV  120
VVRKKANGKG GGASSSNGGG KDARWAEQLL NPCAVAIEAA NFSRVQHLFY VLDELASLSG  180
DANHRVAFHG LRALSFRLFS SAAGASALRR PPSAAAATAV PCFATTEPKL FRSALIKFHE  240
VSPWFTLPNA LANAAILQTL TLDRAQARPL HVVDLGVSHG VQWPTLLEAL TRRPGGGPQP  300
PLVRLTVAGD SAPPGPFSRA PPGYDFSSHL LRYAKSIDLN LRIDRAGSLA GRDLALGAGE  360
TLVVCAQFRL GHAGHDDRTA ILRSVRELNP DLVILSDLDG ADSAVAGGGS PGGFARGAEM  420
LWRFLDSTSA AFKGRDCGER RVVEGEGARV LEAAEGAEGR ERWRERMVGL GFREEGFGDE  480
AVEAVVEGAT GFLLFPVEAP RPLDGSRVGP TGLFVK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B2e-2314248583434Protein SHORT-ROOT
5b3h_B2e-2314248529380Protein SHORT-ROOT
5b3h_E2e-2314248529380Protein SHORT-ROOT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020104738.10.0nodulation-signaling pathway 1 protein
TrEMBLA0A199VVS70.0A0A199VVS7_ANACO; Nodulation-signaling pathway 1 protein
STRINGXP_008802452.11e-178(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61352854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13840.17e-68GRAS family protein