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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Aco003869.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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| Family |
C2H2 |
| Protein Properties |
Length: 317aa MW: 34630.3 Da PI: 6.5882 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aco003869.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 13.5 | 0.00021 | 222 | 244 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++Cp+C+k+F + L H r+H
Aco003869.1 222 HRCPICDKVFGSGQALGGHKRSH 244
79**************9999999 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 10 | 34 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| SuperFamily | SSF57667 | 1.77E-7 | 10 | 33 | No hit | No description |
| SMART | SM00355 | 1.7 | 11 | 33 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 2.6E-5 | 11 | 35 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 10.325 | 11 | 38 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 12 | 33 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 1.77E-7 | 156 | 180 | No hit | No description |
| SMART | SM00355 | 71 | 161 | 181 | IPR015880 | Zinc finger, C2H2-like |
| Pfam | PF13912 | 1.5E-8 | 161 | 182 | IPR007087 | Zinc finger, C2H2 |
| SuperFamily | SSF57667 | 5.31E-5 | 219 | 245 | No hit | No description |
| Pfam | PF13912 | 9.3E-13 | 221 | 244 | IPR007087 | Zinc finger, C2H2 |
| SMART | SM00355 | 0.011 | 222 | 244 | IPR015880 | Zinc finger, C2H2-like |
| PROSITE profile | PS50157 | 9.473 | 222 | 244 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 224 | 244 | IPR007087 | Zinc finger, C2H2 |
| Sequence ? help Back to Top |
| Protein Sequence Length: 317 aa
Download sequence Send
to blast |
MELGGDDKEP HCCRACGKRF PCGRSLGAHM RSHSSPISSF SSDDDGDYEF ANKMTTRDCT 60
NGGSSVTTSS SRTFMELRAC LRLPEPAVPR RAATRRRSRR VASIAAASEV DEEEDVALCL 120
MMLSRDSLSK RSFALERKGE EEFPAKPKKS TGGESEKRAR FACPECNRPF RSYQALGGHR 180
ANRKRINGAG CCSSSSKIPS LPDDSFGAAV ASPESAKKAR AHRCPICDKV FGSGQALGGH 240
KRSHLMASSS DRRVRICSVD DESRDLLDLN LPAPVDDDDD DDDDDDEDSS NVNENVEYKS 300
WWVEGEHKHG SLVGFI*
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