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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco003869.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | C2H2 | ||||||||
Protein Properties | Length: 317aa MW: 34630.3 Da PI: 6.5882 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.5 | 0.00021 | 222 | 244 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C+k+F + L H r+H Aco003869.1 222 HRCPICDKVFGSGQALGGHKRSH 244 79**************9999999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.5E-4 | 10 | 34 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.77E-7 | 10 | 33 | No hit | No description |
SMART | SM00355 | 1.7 | 11 | 33 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 2.6E-5 | 11 | 35 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.325 | 11 | 38 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 12 | 33 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.77E-7 | 156 | 180 | No hit | No description |
SMART | SM00355 | 71 | 161 | 181 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 1.5E-8 | 161 | 182 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.31E-5 | 219 | 245 | No hit | No description |
Pfam | PF13912 | 9.3E-13 | 221 | 244 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.011 | 222 | 244 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.473 | 222 | 244 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 224 | 244 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 317 aa Download sequence Send to blast |
MELGGDDKEP HCCRACGKRF PCGRSLGAHM RSHSSPISSF SSDDDGDYEF ANKMTTRDCT 60 NGGSSVTTSS SRTFMELRAC LRLPEPAVPR RAATRRRSRR VASIAAASEV DEEEDVALCL 120 MMLSRDSLSK RSFALERKGE EEFPAKPKKS TGGESEKRAR FACPECNRPF RSYQALGGHR 180 ANRKRINGAG CCSSSSKIPS LPDDSFGAAV ASPESAKKAR AHRCPICDKV FGSGQALGGH 240 KRSHLMASSS DRRVRICSVD DESRDLLDLN LPAPVDDDDD DDDDDDEDSS NVNENVEYKS 300 WWVEGEHKHG SLVGFI* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020104957.1 | 0.0 | zinc finger protein ZAT4-like | ||||
TrEMBL | A0A199VYM6 | 1e-149 | A0A199VYM6_ANACO; Zinc finger protein ZAT4 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3861 | 35 | 73 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45120.1 | 5e-24 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | Aco003869.1 |