PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco003774.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | C2H2 | ||||||||
Protein Properties | Length: 534aa MW: 54868.1 Da PI: 8.3809 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.1 | 1.5e-05 | 75 | 97 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Aco003774.1 75 FVCEICNKGFQRDQNLQLHRRGH 97 89*******************88 PP | |||||||
2 | zf-C2H2 | 13.3 | 0.00024 | 151 | 173 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +t+ Aco003774.1 151 WKCDKCSKKYAVQSDWKAHAKTC 173 58******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.91E-7 | 74 | 97 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-5 | 74 | 97 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12171 | 8.6E-5 | 75 | 97 | IPR022755 | Zinc finger, double-stranded RNA binding |
SMART | SM00355 | 0.017 | 75 | 97 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.949 | 75 | 97 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 230 | 116 | 146 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 4.0E-4 | 139 | 172 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 3.91E-7 | 146 | 171 | No hit | No description |
SMART | SM00355 | 150 | 151 | 171 | IPR015880 | Zinc finger, C2H2-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009937 | Biological Process | regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010029 | Biological Process | regulation of seed germination | ||||
GO:0010431 | Biological Process | seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 534 aa Download sequence Send to blast |
MPTEQQENSS VMTASNSASG EASVSSSGPQ QLLPLPPPHP MPPPAKKKRN LPGMPDPEAE 60 VIALSPKTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLRQRTGKE ARKRVYVCPE 120 ATCVHHDPAR ALGDLTGIKK HFCRKHGEKK WKCDKCSKKY AVQSDWKAHA KTCGTREYRC 180 DCGTLFSRRD SFITHRAFCD ALAEESAKTH PSPAPPPPPP APAPAPEEEV PPLRQVVTPP 240 EQQEPENPPG IFQYMPPPST TTIGISAATT SGSNSSGGSG GGGGGGGAAT STTSLFASLF 300 ASVAPSVASA QSTTAFSDLV GAMGRAEPPP ALCLSTNSPA AAAAAAAAAA AALFPNSASS 360 DQCSPFALHP PPPPSPHMSA TALLQKAAQM GAAASGSSFL RGLGLATSVS NPQPQQDQWH 420 HNLDHPEPGP MLSAGLGLGL PYDGAAPGLP ELMMGPSPLV GPKPTTLDLL GLAMGPIGGS 480 AATAGGLSAL ITSIGGGLDM GAGGVQRSNA AAPYGGKPWE GAAERKSNSP AML* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 2e-36 | 147 | 208 | 3 | 64 | Zinc finger protein JACKDAW |
5b3h_F | 2e-36 | 147 | 208 | 3 | 64 | Zinc finger protein JACKDAW |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00592 | DAP | Transfer from AT5G66730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054502 | 1e-180 | BT054502.1 Zea mays full-length cDNA clone ZM_BFc0103M17 mRNA, complete cds. | |||
GenBank | BT054618 | 1e-180 | BT054618.1 Zea mays full-length cDNA clone ZM_BFb0032E02 mRNA, complete cds. | |||
GenBank | EU955578 | 1e-180 | EU955578.1 Zea mays clone 1537717 nucleic acid binding protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020104659.1 | 0.0 | protein indeterminate-domain 2-like | ||||
Swissprot | Q9LVQ7 | 1e-152 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A199UZ24 | 0.0 | A0A199UZ24_ANACO; Protein indeterminate-domain 1 | ||||
STRING | XP_008776861.1 | 0.0 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP202 | 38 | 320 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G50700.1 | 1e-103 | indeterminate(ID)-domain 2 |
Link Out ? help Back to Top | |
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Phytozome | Aco003774.1 |
Publications ? help Back to Top | |||
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