PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco003668.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family SBP
Protein Properties Length: 373aa    MW: 39747.4 Da    PI: 7.1624
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco003668.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP133.38e-4287163278
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  C v+gC++dls++++yhrrhkvCevhsk+p vlv g+eqrfCqqCsrfh l efDe krsCr+rL++hn+rrrk+q+
  Aco003668.1  87 CLVDGCNSDLSSCRDYHRRHKVCEVHSKTPIVLVGGQEQRFCQQCSRFHLLAEFDEVKRSCRKRLDGHNRRRRKPQP 163
                  **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.9E-3480148IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.30884161IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.67E-4086166IPR004333Transcription factor, SBP-box
PfamPF031106.0E-3187160IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 373 aa     Download sequence    Send to blast
MDWDAKLSPW DLSEFDQASD ATMGSMVGGS GGGGKNCSVD LKLGGLGDFA PAAPEKWREQ  60
SAKAPPSAAP SKRARGPGGS SQAAASCLVD GCNSDLSSCR DYHRRHKVCE VHSKTPIVLV  120
GGQEQRFCQQ CSRFHLLAEF DEVKRSCRKR LDGHNRRRRK PQPEPISPGI LFSNQHQATQ  180
FSNYPPIFTA AATEPSWASI MKAEENDAIP LYPHPHHPPL QLVDRTQTIP ASFSSAFKEQ  240
KRFPFLQEKD DTALPVRPAL KPVPHGLAQV LDSSDCALSL LSSPPTAQNS SITNAIPMGQ  300
SMVSAVHYGG SGDFSASGFS CDENAGSVVL VPDAGGSELQ HHCQAMFHGG GGGRGGQGSS  360
DGNSQALPFM WQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-2876160184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143160KRSCRKRLDGHNRRRRKP
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00555DAPTransfer from AT5G50570Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6664590.0KM666459.1 Ananas bracteatus clone 51775e microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020106348.10.0squamosa promoter-binding-like protein 16
SwissprotQ6YZE83e-65SPL16_ORYSJ; Squamosa promoter-binding-like protein 16
TrEMBLA0A2H3YPU01e-122A0A2H3YPU0_PHODC; squamosa promoter-binding-like protein 16
STRINGXP_008801848.11e-123(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17553795
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-51SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wang SS,Wang CS,Tseng TH,Hou YL,Chen KY
    High-resolution genetic mapping and candidate gene identification of the SLP1 locus that controls glume development in rice.
    Theor. Appl. Genet., 2011. 122(8): p. 1489-96
    [PMID:21327937]
  3. Wang S, et al.
    Control of grain size, shape and quality by OsSPL16 in rice.
    Nat. Genet., 2012. 44(8): p. 950-4
    [PMID:22729225]
  4. Wang S, et al.
    The OsSPL16-GW7 regulatory module determines grain shape and simultaneously improves rice yield and grain quality.
    Nat. Genet., 2015. 47(8): p. 949-54
    [PMID:26147620]
  5. Wang Y, et al.
    A comprehensive meta-analysis of plant morphology, yield, stay-green, and virus disease resistance QTL in maize (Zea mays L.).
    Planta, 2016. 243(2): p. 459-71
    [PMID:26474992]
  6. Lee CM, et al.
    Influence of Multi-Gene Allele Combinations on Grain Size of Rice and Development of a Regression Equation Model to Predict Grain Parameters.
    Rice (N Y), 2015. 8(1): p. 33
    [PMID:26519289]
  7. Bessho-Uehara K, et al.
    Loss of function at RAE2, a previously unidentified EPFL, is required for awnlessness in cultivated Asian rice.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(32): p. 8969-74
    [PMID:27466405]