PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Aco003467.1

Organism

Ananas comosus

Taxonomic ID

4615

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas

Family

Nin-like

Protein Properties

Length: 326aa MW: 36555.2 Da PI: 4.7797

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Aco003467.1	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.1	2.4e-25	233	283	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l+dl yF+lpi+ AAkeL++c T+LK+iCR++G++RWPhRkiksl Aco003467.1 233 TGKLRLSDLVGYFHLPIAVAAKELDICSTALKKICRKHGMARWPHRKIKSL 283 56899********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.405	223	303	IPR003035	RWP-RK domain
Pfam	PF02042	1.6E-22	236	283	IPR003035	RWP-RK domain

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MDDIQQLELP YQYEDEDDDV LRYLEFSDPD YTQPLLLQPP TPDDEPATDP SSTMLDSSFV 60 LVDEGDGDLC FLDSNAAEVA ASSLDCSGCH VLREVVHTNG LKSMKLSIHG GSGVFYHATF 120 DVYYNTDGFP PAMEQSYIEY AIQVLSFLIL STQDYEWVRQ FLTDYGLLRV RDNYVLIQDS 180 LSDFYDVLCT RMSFEEEAKT DTTVAEPGRH VDAGRSPQIK TGRNGIAAQR ERTGKLRLSD 240 LVGYFHLPIA VAAKELDICS TALKKICRKH GMARWPHRKI KSLDKRISSL HRELRSGIGE 300 GAIHIQAEIE RLNIKKARIC AGLPP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020106602.1	0.0	uncharacterized protein LOC109722850
TrEMBL	A0A199V4E3	1e-164	A0A199V4E3_ANACO; Protein NLP3
STRING	XP_008791759.1	1e-115	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8055	29	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35590.1	6e-13	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	Aco003467.1