PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco003074.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | NF-YB | ||||||||
Protein Properties | Length: 315aa MW: 33985.8 Da PI: 7.4127 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 168.1 | 1.1e-52 | 71 | 167 | 1 | 97 |
NF-YB 1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelegek 97 vreqdr++Pianv+rim++vlP++aki++daket+qecvse+isf+tsea+++cqre+rkti++dd+lwa++ lGf+dyvepl+v+l++yr++eg++ Aco003074.1 71 VREQDRLMPIANVIRIMRRVLPTHAKIADDAKETMQECVSEYISFITSEANERCQREQRKTITADDILWAMSRLGFQDYVEPLSVFLHRYRQAEGDH 167 69********************************************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 2.5E-49 | 65 | 170 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 1.09E-36 | 74 | 170 | IPR009072 | Histone-fold |
Pfam | PF00808 | 2.4E-25 | 78 | 141 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
PRINTS | PR00615 | 4.1E-16 | 105 | 123 | No hit | No description |
PROSITE pattern | PS00685 | 0 | 108 | 124 | IPR003956 | Transcription factor, NFYB/HAP3, conserved site |
PRINTS | PR00615 | 4.1E-16 | 124 | 142 | No hit | No description |
PRINTS | PR00615 | 4.1E-16 | 143 | 161 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0033613 | Molecular Function | activating transcription factor binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MEGVGGGSRS FQGLQGNNLG NACVCARARM RMSLCVCART RLPDPVQQAV QHEPAAAVGG 60 GGGHQAPQQH VREQDRLMPI ANVIRIMRRV LPTHAKIADD AKETMQECVS EYISFITSEA 120 NERCQREQRK TITADDILWA MSRLGFQDYV EPLSVFLHRY RQAEGDHRGS LRPDLLPIAP 180 LLKRHSSSSN SHQSNLAFPL LPPPPPMPMP ILHDEAPPMT AHPLPLPLPL PSFATAAVMP 240 PSQMLPPFTA AAVVPPPQHN PFGQMYGGDG MLGGYYAAVG MYGDAGGGGE STSSYVPAIA 300 PPNFDHHHPY AAFK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_A | 3e-56 | 71 | 162 | 6 | 97 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT B-6 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB288036 | 8e-90 | AB288036.1 Oryza sativa Japonica Group OsHAP3E mRNA for HAP3 subunit of HAP complex, complete cds. | |||
GenBank | AK107861 | 8e-90 | AK107861.1 Oryza sativa Japonica Group cDNA clone:002-134-B07, full insert sequence. | |||
GenBank | AP004179 | 8e-90 | AP004179.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:OJ1124_G07. | |||
GenBank | AP014958 | 8e-90 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY062184 | 8e-90 | AY062184.1 Oryza sativa (indica cultivar-group) HAP3 transcriptional-activator (LEC1B) mRNA, complete cds. | |||
GenBank | AY062185 | 8e-90 | AY062185.1 Oryza sativa (indica cultivar-group) HAP3 transcriptional-activator (LEC1B) gene, complete cds. | |||
GenBank | AY264284 | 8e-90 | AY264284.1 Oryza sativa (indica cultivar-group) leafy cotyledon 1 gene, complete cds. | |||
GenBank | CP012610 | 8e-90 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020091168.1 | 1e-174 | nuclear transcription factor Y subunit B-9-like | ||||
TrEMBL | A0A199UMK9 | 1e-165 | A0A199UMK9_ANACO; Nuclear transcription factor Y subunit B-6 |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP201 | 38 | 331 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 6e-56 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Aco003074.1 |