PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002443.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HB-other
Protein Properties Length: 1070aa    MW: 117860 Da    PI: 9.6377
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002443.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.82.8e-0678134157
                  TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                  +++R  ++++ ++ +++ F  + ++ ++e +e+++ +g+t +qV+ +F  +R + +k
  Aco002443.1  78 KKPRDLLNPKAVKYMQSIFSIKDTIGKKETREISALCGVTVTQVRDFFTSQRSRVRK 134
                  799**************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.05475135IPR001356Homeobox domain
SMARTSM003890.001277139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.0E-578139IPR009057Homeodomain-like
CDDcd000862.41E-478134No hitNo description
SuperFamilySSF466892.52E-678138IPR009057Homeodomain-like
Gene3DG3DSA:1.20.930.103.6E-5268354IPR017923Transcription factor IIS, N-terminal
SuperFamilySSF476764.45E-5270356IPR017923Transcription factor IIS, N-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009911Biological Processpositive regulation of flower development
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1070 aa     Download sequence    Send to blast
MALVPAAAAA AEAGALVESD LGGVSAESLA GILHAQRELF HSQVEELQRL VVAQCKLTGV  60
NPLAQEMAAG ALYIKIGKKP RDLLNPKAVK YMQSIFSIKD TIGKKETREI SALCGVTVTQ  120
VRDFFTSQRS RVRKLVHLSH EKATRLEVSH QSSSNVCCII SDQPPPISIE PPLQTAEPQK  180
ALEPSGIPTN SAIIYATSKE IQQGTEHLVN VKAVEGSTKQ DTVPGEAFHG VDSEDKTFLD  240
SVFSLMRKDE TFSGQVKLME WILHINNIAV LHWFVTRGGL TILATWLSQA AVEEQTSVLD  300
VIFKVLCHLP LHKALPVDMS AILQTVNRLR FYRSSDISNR AKILLKRWSK LLLRSQALRK  360
PPINSLKEVQ KAMICKQRIG EILKDEFWQN DTEIPEDILA LTENTENSSV TEPKKALKLL  420
TASSDESTKK HGLTVSSSKT KERRKVLLVE HPERKSAGRN VQVARAVSTC SSRPLSADDI  480
QKAKMRAMYM QNKYGKADAS KSENNLQKTE NPKVSPTSPS AHTIMPALRI SQLPPLKKSV  540
EKTPLATTAN HPCHKPEIPV KQKPILTSRE HLMEMLKRNQ IRWRTPPEVR IDPAWRVGAG  600
ENSKELQVQT QRNRREKEMC NLNLQDIPPN PKEPWDTEMD FDDSLTLEIP TEQPPDADAM  660
EEDLVPPPPP SNTQILTEAS PPDPTPSVSP PASGEGAGPP GPDLELLAVL LKNPELVFAL  720
TSGQGKSLPS EQTVALLDLL KRSGVGLAEL VKGSVNGSEE KPKEPQPVPV PVPAPVPIPQ  780
LKHETKPEPI PTSLPSPTPP SDPAERINWR SEFPTPMRTP ALQPHLPIIR GGTAISNTAG  840
PPPRTHSPVV APSLVDNFSN ARTTSLSMPQ LSGSINPSHQ HRPAHDILPN RQRDPSLHQN  900
PAFTGDVLSS RHQLVSNIPT ASVRSMSPAL NATKSMPQSE PTAFPPRVPS WQSTGATSAW  960
RGPQSNLPDV PDPTPRLPMS QNGYNNSYSN GAMPAHRVAF PGRDEPMLDS WSPHGSPRSE  1020
FRAGWNPTEQ RMNDGRSYRP ESSRQWNPGN RDQYRSGSSR RWRDRDRRR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6667381e-167KM666738.1 Ananas bracteatus clone 52112a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086122.10.0homeobox protein LUMINIDEPENDENS
TrEMBLA0A199W3040.0A0A199W304_ANACO; Homeobox protein LUMINIDEPENDENS
STRINGXP_008810783.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP80433034
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02560.21e-178HB-other family protein