PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco002440.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family C2H2
Protein Properties Length: 491aa    MW: 52340.2 Da    PI: 8.946
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco002440.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.42.5e-057698123
                 EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                 ++C++C+k F r  nL+ H r H
  Aco002440.1 76 FVCEICHKGFQRDQNLQLHRRGH 98
                 89*******************88 PP
2zf-C2H211.30.0011157179123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  +kC +C+k +  +s+ k H + +
  Aco002440.1 157 WKCDKCSKKYAVQSDWKAHSKIC 179
                  58*****************9876 PP
3zf-C2H211.60.00084187205523
                  TTTEEESSHHHHHHHHHHT CS
      zf-C2H2   5 dCgksFsrksnLkrHirtH 23 
                  dCg++Fsr++++ +H   +
  Aco002440.1 187 DCGTVFSRRDSFITHRAFC 205
                  9**************8765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.607.3E-57598IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.91E-67598No hitNo description
PROSITE profilePS5015710.6377698IPR007087Zinc finger, C2H2
SMARTSM003550.0467698IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807898IPR007087Zinc finger, C2H2
SMARTSM00355240122152IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.2E-4145178IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.91E-6152177No hitNo description
SMARTSM00355150157177IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MSNISGDGGS FHSGKNTGED EGHHHHPLLH QSSAIGPEAN PPPPAAKKKR SLPGTPDPNA  60
EVIALSPRTL MATNRFVCEI CHKGFQRDQN LQLHRRGHNL PWKLRQRASG GDAAEAARKK  120
VYVCPEPTCV HHEASRALGD LTGIKKHFCR KHGEKKWKCD KCSKKYAVQS DWKAHSKICG  180
TREYKCDCGT VFSRRDSFIT HRAFCDALGQ ESNKLNQPMM AHSNLQGPAH VLLSAGNAPV  240
TTSVGLADFT DDAKDPQLKP FSDETALTSP RPLGMAGCML SSFGPSSLHL KGTIGPLGLD  300
GLGDANIGQV AAGSSGHMSA TALLQKAAQM GAAPVSNNVS SAMMHRGVVS MMAGPDRFSG  360
TRPCGPIKAH GLYNEIRLQG QQDHLAELGM NQHYSAPMND LSAFSRPIPY LLGGSGGSGS  420
GSGGGGGRGG DVRMVDYLGV GPQRSPHEQH NPQQHVGLQG VIPHQRLQSL GPFQEMTHGL  480
ISLEKPIWDV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-34153216366Zinc finger protein JACKDAW
5b3h_F9e-34153216366Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020086123.10.0protein indeterminate-domain 2-like
SwissprotQ9SCQ61e-106IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A199W2W00.0A0A199W2W0_ANACO; Protein indeterminate-domain 2
STRINGXP_008789952.11e-168(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.14e-94indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]