PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco002425.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | ERF | ||||||||
Protein Properties | Length: 328aa MW: 35721 Da PI: 6.5514 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.7 | 2.5e-17 | 58 | 106 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 + GVr+++ +gr++AeIrdp++ + r++lg+f+ta eAa a+++a+++++g Aco002425.1 58 FLGVRRRP-WGRYAAEIRDPTT---KERHWLGTFDTAHEAALAYDRAALSMKG 106 56******.**********965...5************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 2.3E-31 | 57 | 120 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.45E-28 | 57 | 113 | No hit | No description |
PROSITE profile | PS51032 | 20.6 | 57 | 114 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-7 | 58 | 69 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.7E-28 | 58 | 114 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-20 | 58 | 115 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.7E-11 | 60 | 106 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.1E-7 | 80 | 96 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MSQNPQGYNN SPTITNQNET NPAASHYSPP PQSSSPTSPS NSNERRSGRR KPIEPGRFLG 60 VRRRPWGRYA AEIRDPTTKE RHWLGTFDTA HEAALAYDRA ALSMKGTQAK TNFMYTATTT 120 SLYTPFHTTQ PLFTPPLTVA TPPPPTTTLP MQQPTNHNMP GSTHHHQHHQ HHHNQSGHEG 180 TVESDFFFSD DTKSGYLSSI IPESCLIPTS STRDPQGKDT TGCIPHSLTS GSVLDSHSCG 240 AMGAMSSEEF PTWVDHKPLW EYNNACGLPT YTSSSEPACM DESGSCLMQG NASYGSYPQG 300 LETYSSSFSS SSSSSSTDFV DLGYSLF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-19 | 47 | 113 | 4 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the control of cell division patterns during the early lateral root primordium development. Acts downstream of auxin signaling (PubMed:17630277). Regulated by ARF7 and ARF19 in response to auxin. Co-acts with LBD16 and LBD18 to control lateral root development (PubMed:23749813). Involved in the determination of floral meristem identity and suppression of bract growth. Required for proper conversion of secondary inflorescences to flowers. Acts together with NPR5/BOP2 and NPR6/BOP1 to promote expression of LFY and AP1, two central regulators of floral meristem identity (PubMed:19482972). {ECO:0000250|UniProtKB:Q9LND1, ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:19482972, ECO:0000269|PubMed:23749813}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:17630277, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020086114.1 | 0.0 | ethylene-responsive transcription factor ERF086-like | ||||
Swissprot | Q6J9Q2 | 3e-41 | ERF86_ARATH; Ethylene-responsive transcription factor ERF086 | ||||
TrEMBL | A0A199W290 | 0.0 | A0A199W290_ANACO; Ethylene-responsive transcription factor ERF086 | ||||
STRING | XP_008796243.1 | 2e-66 | (Phoenix dactylifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10525 | 28 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18560.1 | 3e-42 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco002425.1 |
Publications ? help Back to Top | |||
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