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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Aco002326.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
| Family |
SRS |
| Protein Properties |
Length: 304aa MW: 32009.5 Da PI: 8.5837 |
| Description |
SRS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aco002326.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | DUF702 | 222.7 | 7.3e-69 | 73 | 232 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkel 100
s +++CqdCGnqakkdC+h+RCRtCCksrgfdC+thvkstWvpaa+rrerqq +aa + a +sa+++a+k++r s++++++s+t++s++++++++
Aco002326.1 73 SSSSTCQDCGNQAKKDCTHRRCRTCCKSRGFDCSTHVKSTWVPAARRRERQQLTAA-NIGAGSSASTSAPKKPRLI-SSQTTTTSHTSTSNTTPPRSF 168
56789********************************************9776655.6788888999999999986.88899999************* PP
DUF702 101 etss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
+t+s lP++v+++avf+cvrv+s++dge+++aYq+ v+igGhvfkG+LydqG+++
Aco002326.1 169 DTTSshqdasfresLPRHVQAPAVFKCVRVTSIEDGEDQYAYQAMVTIGGHVFKGFLYDQGVDD 232
*9999********************************************************986 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 304 aa
Download sequence Send
to blast |
MNRFFSYHLF LSQLGLITLK PGTATSSIQF LQPQPQLPSR PVAAISYMRK PVPMFDAPGI 60
LSGAGVGLAG SSSSSSTCQD CGNQAKKDCT HRRCRTCCKS RGFDCSTHVK STWVPAARRR 120
ERQQLTAANI GAGSSASTSA PKKPRLISSQ TTTTSHTSTS NTTPPRSFDT TSSHQDASFR 180
ESLPRHVQAP AVFKCVRVTS IEDGEDQYAY QAMVTIGGHV FKGFLYDQGV DDGADHDHDH 240
DHDHAAATSN ASAIPNISEL HLGGGARNGA SSSSPMLPSD VYGGGPHGGG GFLGGTNFGN 300
PIN*
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18835563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269|PubMed:18835563}. |
| Best hit in Arabidopsis thaliana ? help
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| Hit ID |
E-value |
Description |
| AT5G12330.2 | 2e-60 | Lateral root primordium (LRP) protein-related |
