PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001844.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family ERF
Protein Properties Length: 266aa    MW: 29320.6 Da    PI: 6.7164
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001844.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.44.7e-2066116155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  ++y+G+r+++ +g+W+AeIrdp   gk  r++lg+f t+e+Aa+a+++a+++++g
  Aco001844.1  66 TQYRGIRRRP-WGKWAAEIRDP---GKGVRVWLGTFATPEDAARAYDRAARRIRG 116
                  58********.**********8...545*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.32E-1966124No hitNo description
PfamPF008478.0E-1367116IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-2267125IPR016177DNA-binding domain
PROSITE profilePS5103224.31667124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.3E-3267124IPR001471AP2/ERF domain
SMARTSM003802.8E-3767130IPR001471AP2/ERF domain
PRINTSPR003677.5E-116879IPR001471AP2/ERF domain
PRINTSPR003677.5E-1190106IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MCGGAIISDL IPPRKNSRGG GGGGIWPDSL FSGGSDGSDF AEFNPVSTEK GGRKKRERER  60
ERERKTQYRG IRRRPWGKWA AEIRDPGKGV RVWLGTFATP EDAARAYDRA ARRIRGKKAK  120
LNFPTILFTN QQQQQQQEDQ HHHHHHQPPP PPPPPPPPQD HSSIPCCSSS STNTATTTNP  180
NNNDVNGGGG EVERLCEELR EYESVMSFFQ IPYMEGGVVV LDEDEKEEEL PPAPLPPPPQ  240
CTQQANAMGG LWSFDDAHIS SIALL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A8e-2367124260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6669531e-152KM666953.1 Ananas bracteatus clone 52367a microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020108752.10.0ethylene-responsive transcription factor ERF071
TrEMBLA0A199VUP09e-89A0A199VUP0_ANACO; Ethylene-responsive transcription factor ERF071
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115852836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.22e-20ERF family protein