 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Aco001844.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
| Family |
ERF |
| Protein Properties |
Length: 266aa MW: 29320.6 Da PI: 6.7164 |
| Description |
ERF family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aco001844.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 63.4 | 4.7e-20 | 66 | 116 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
++y+G+r+++ +g+W+AeIrdp gk r++lg+f t+e+Aa+a+++a+++++g
Aco001844.1 66 TQYRGIRRRP-WGKWAAEIRDP---GKGVRVWLGTFATPEDAARAYDRAARRIRG 116
58********.**********8...545*************************98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 266 aa
Download sequence Send
to blast |
MCGGAIISDL IPPRKNSRGG GGGGIWPDSL FSGGSDGSDF AEFNPVSTEK GGRKKRERER 60
ERERKTQYRG IRRRPWGKWA AEIRDPGKGV RVWLGTFATP EDAARAYDRA ARRIRGKKAK 120
LNFPTILFTN QQQQQQQEDQ HHHHHHQPPP PPPPPPPPQD HSSIPCCSSS STNTATTTNP 180
NNNDVNGGGG EVERLCEELR EYESVMSFFQ IPYMEGGVVV LDEDEKEEEL PPAPLPPPPQ 240
CTQQANAMGG LWSFDDAHIS SIALL*
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1gcc_A | 8e-23 | 67 | 124 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | KM666953 | 1e-152 | KM666953.1 Ananas bracteatus clone 52367a microsatellite sequence. |
