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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Aco001562.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family |
Trihelix |
Protein Properties |
Length: 319aa MW: 37373.1 Da PI: 7.8525 |
Description |
Trihelix family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Aco001562.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | trihelix | 75 | 1.2e-23 | 59 | 140 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
+W++ e+ + ++ar e+++++ ++k++kplWe+vs+++r +gf r+p qCk+kw+nl +r+k +++e++ s++++p++++++
Aco001562.1 59 QWSHAETAEFLAARAELDRSFAAAKRNKPLWEAVSARLRLKGFARTPDQCKSKWKNLLTRFKGSEAMEQE----SERQFPFYEEMR 140
7********************************************************************8....46789*****97 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 319 aa
Download sequence Send
to blast |
MAHHLYPHLH FHGVDDASYY ELNVVDVDPP LLQPPPPPLP PLPPPRPHER EAAASGVPQW 60 SHAETAEFLA ARAELDRSFA AAKRNKPLWE AVSARLRLKG FARTPDQCKS KWKNLLTRFK 120 GSEAMEQESE RQFPFYEEMR RIFSYRMERL LAFEKSSAKK KKKTKGKELE EELEEEEEKE 180 EKEEEEEEEE EEERRKRSTN IKNKKKRRWR RKRKGAGAGA GAGAGVVEEV EGALRELMRR 240 QAEMEERWME AAEAREAERR EKEGEWRRAM ANLWEERLAM ERRWRQHDEE RRARAEARAE 300 RQHALVSALL AKFQGEGS*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 194 | 213 | RKRSTNIKNKKKRRWRRKRK |
2 | 203 | 207 | KKKRR |