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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Aco001423.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
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Family | C2H2 | ||||||||
Protein Properties | Length: 287aa MW: 32381 Da PI: 7.0417 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00041 | 69 | 91 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C + F++ L H+++H Aco001423.1 69 YACSFCRREFRSAQALGGHMNVH 91 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 4.25E-6 | 66 | 95 | No hit | No description |
Pfam | PF13912 | 2.1E-5 | 69 | 92 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 11.177 | 69 | 96 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 71 | 91 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MHSEKEGQEE GYRMRRRKKP SDEGPDLFHP PMRAITLNSS SYKASWEEKA FTEDSEGLLG 60 VYTWPPRSYA CSFCRREFRS AQALGGHMNV HRRDRARLKL SSSSIGDNQD SPDDHGRDLY 120 PNAPQATLEC SSKPNPNSLC GDIASPLSSH NRDLVVSAAT EIWSEHIFIY PPYSLPNVRH 180 NKKDTTLSFT VQCSDEDPKT IEPPRSIQEL AHGRDNLGCR PRRYRDEDSE ETINSKRSKT 240 NHTISPLFAR SFAGKGQQLQ PEVLKLCSNS VEELDLELRL GDPPKI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 1e-12 | 64 | 91 | 2 | 29 | superman protein |
2l1o_A | 1e-12 | 64 | 91 | 2 | 29 | Transcriptional regulator SUPERMAN |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020108955.1 | 0.0 | probable transcriptional regulator RABBIT EARS | ||||
TrEMBL | A0A199VSN0 | 0.0 | A0A199VSN0_ANACO; Transcriptional regulator SUPERMAN |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9594 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17810.1 | 3e-24 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Aco001423.1 |