 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Aco001390.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
|
| Family |
C2H2 |
| Protein Properties |
Length: 381aa MW: 41301.1 Da PI: 9.9597 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Aco001390.1 | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 12.2 | 0.00057 | 159 | 182 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23
+ C+ Cg++ + +++L+ H+ t H
Aco001390.1 159 FACSACGEVLTKPHLLELHQATkH 182
78******************9988 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 381 aa
Download sequence Send
to blast |
MASGARTSLL DIFLLLFFLL SLHLGCCFSP SRSQDDPDPQ HARPKRRKIS PLSPSPPASD 60
PDSDSDSGDA RPDRNGGLGL GLSLTSVRSY LRRFFSVPKR GGREDIRSPP VDLSPCPCPC 120
PRIAADKSPS SGSAGISAAD CPCPPGTKHT SFASRADVFA CSACGEVLTK PHLLELHQAT 180
KHSLSELSDA DSGKNIVRII FLSGWKGRAP PTVRRILKVH NTQRTLARFE EYRDLVRSRA 240
ARRGGGAEFE RCIADGNERL RFYCSTMLCS LGGGACGSPY CCTCGIVRHG FAGKQADLDG 300
IATHASSWGA HASLPDDLER EFAYLRARRA MLVCRVVARA RARTSNWKPR RRGRAGRSTR 360
WRRGTSSCWC SIPGLCCRAS *
|
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KM663318 | 2e-97 | KM663318.1 Ananas bracteatus clone 47654 microsatellite sequence. |
