PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001366.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family HD-ZIP
Protein Properties Length: 754aa    MW: 81427.8 Da    PI: 6.5618
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001366.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.95.3e-211672157
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
     Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                 +++ +++t+ q+++Le++F+++++p++++r +L+++lgL+ rq+k+WFqNrR+++k+
  Aco001366.1 16 KKRYHRHTPRQIQQLEAMFKECPHPDEKQRMHLSRELGLEPRQIKFWFQNRRTQMKH 72
                 688999************************************************995 PP
2START165.44.1e-522354592206
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv............dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 
                  +a  a++el+++++ +ep+W k    ++g evl +++ ++              ++ea+r+sg+v+m+++ lv  ++d++ +W e ++    k  t+e
  Aco001366.1 235 MAAGAMEELIRLVQTDEPLWIKHG--SDGREVLGIETYDRIfpkpgnqfrgpdIRVEASRDSGLVFMNSVALVDMFMDSS-KWFEFFPtiisKTRTVE 329
                  56789*****************99..66666666666655566666789***99**************************.***9999999******* PP

                  EECTT.....EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SS CS
        START  84 vissg.....galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdlkgr 175
                  v+ +g     g l lm+ el +lsp+vp R+f f+Ry++q ++g w+i+dvSvd  ++ ++     R+++lpSg+li++++ng+skvtw+eh++ +++
  Aco001366.1 330 VLATGmagrsGSLLLMYEELHVLSPVVPtREFCFLRYCQQIEQGLWAIADVSVDLSRESNQFNAPSRSRRLPSGCLIQEMPNGYSKVTWIEHMEIEEK 427
                  *******************************************************99999855556999***************************** PP

                  XX.HHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
        START 176 lp.hwllrslvksglaegaktwvatlqrqcek 206
                   p h l+r lv+sg+a+ga +w+ tlqr ce+
  Aco001366.1 428 APiHLLFRDLVGSGAAFGAHRWLTTLQRTCER 459
                  ******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.97E-20872IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.7E-221073IPR009057Homeodomain-like
PROSITE profilePS5007118.011373IPR001356Homeobox domain
SMARTSM003893.9E-201477IPR001356Homeobox domain
PfamPF000461.6E-181672IPR001356Homeobox domain
CDDcd000867.00E-201674No hitNo description
PROSITE patternPS0002704871IPR017970Homeobox, conserved site
PROSITE profilePS5084850.601225462IPR002913START domain
SuperFamilySSF559611.3E-34226460No hitNo description
CDDcd088753.42E-119229458No hitNo description
SMARTSM002344.8E-42234459IPR002913START domain
PfamPF018524.6E-45237459IPR002913START domain
Gene3DG3DSA:3.30.530.201.2E-6326429IPR023393START-like domain
SuperFamilySSF559611.15E-21480713No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009828Biological Processplant-type cell wall loosening
GO:0010091Biological Processtrichome branching
GO:0005634Cellular Componentnucleus
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MDFGEEPEGS DGQRKKKRYH RHTPRQIQQL EAMFKECPHP DEKQRMHLSR ELGLEPRQIK  60
FWFQNRRTQM KHESVVNLVC SPAAAAAAAA AAAPQAQHER ADNCALRAEN DKIRCENIAI  120
REALRNVVCP TCGGPPVADD AYFDEQKLRM ENARLKEELD RVSSLTSKYL GRPITQLPPV  180
QPVPISSLDL SVGGFAAPSL GPSLDLDLLT GASASMSLPF PTAVSEMEKP LMAEMAAGAM  240
EELIRLVQTD EPLWIKHGSD GREVLGIETY DRIFPKPGNQ FRGPDIRVEA SRDSGLVFMN  300
SVALVDMFMD SSKWFEFFPT IISKTRTVEV LATGMAGRSG SLLLMYEELH VLSPVVPTRE  360
FCFLRYCQQI EQGLWAIADV SVDLSRESNQ FNAPSRSRRL PSGCLIQEMP NGYSKVTWIE  420
HMEIEEKAPI HLLFRDLVGS GAAFGAHRWL TTLQRTCERF ACLMAAGASP RDIGGVIPSP  480
EGKRSMMKLS QRMVNNFCAS LSASHMHRWT TLSGLNDVGV RVTVHRSSDP GQPNGVVLSA  540
ATSLWLPVSC ERVFSFFRDE TMRTQWDVLS SGNSVQEVAR ITSGSHPGNC ISLLRGLNSS  600
QNSMLILQES CTDASGSLVI YAPIDIPAVN VVMSGEDPSN VALLPSGFTI LPDGRPGGGG  660
GASTSSNPMG ASLGSLITVA FQILVSSLPS SKLNVESVAT VNNLISTTVQ QIKAALNCPN  720
GAGTGASFGL KPASTDAAAS AASAASAAPG LSS*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00232DAPTransfer from AT1G73360Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM6663561e-136KM666356.1 Ananas bracteatus clone 51642c microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020109515.10.0homeobox-leucine zipper protein ROC8
SwissprotQ69T580.0ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A2H3XV660.0A0A2H3XV66_PHODC; homeobox-leucine zipper protein ROC8-like
STRINGXP_008789231.10.0(Phoenix dactylifera)
STRINGXP_008806630.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29123770
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73360.10.0homeodomain GLABROUS 11