PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aco001346.1
Organism
Ananas comosus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Bromeliaceae; Ananas
Family GeBP
Protein Properties Length: 288aa    MW: 31547.5 Da    PI: 9.3623
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aco001346.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573431.3e-1394178797
       DUF573   7 wseeDeivlLqGlidfkaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  w+e De++lL G   f+a+tg+ p    + +f++ vk+s+s + +++ +  K++rLK Kf +  ++           +h++ + +l+  iWg
  Aco001346.1  94 WTEADEVALLTGAAAFRARTGSVPRLpVMGEFFDSVKGSLSPHLNRDRVYYKLKRLKSKFLHTTAD-------PRGGPHEHLVHDLCAEIWG 178
                  *********************9777659*********************************99988.......5667899999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045044.4E-1494178IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MSSEGPNSNS LDVDPKSPDK SPNPRPKKRR TSKFSKPKSR NRPKPSLSSA LVPFSAASMA  60
AAAAPARKSD RKRKPREFPD AAGERSAAAA LKPWTEADEV ALLTGAAAFR ARTGSVPRLP  120
VMGEFFDSVK GSLSPHLNRD RVYYKLKRLK SKFLHTTADP RGGPHEHLVH DLCAEIWGAE  180
AEEGGDDAPE GDGPAEASDW AEEEDADDGA DAFPFLKEAL GDYWRSNGCF LSGSSLRKGL  240
KRADPSEAKV MDVKWRKQCE AELRLQMRQL EISKEIYALL IETMKRS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12531PKKRRTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020083494.10.0GLABROUS1 enhancer-binding protein-like 2
RefseqXP_020083495.10.0GLABROUS1 enhancer-binding protein-like 2
RefseqXP_020083496.10.0GLABROUS1 enhancer-binding protein-like 2
TrEMBLA0A3L6DGQ45e-65A0A3L6DGQ4_MAIZE; Putative transcription factor
STRINGGRMZM2G066373_P012e-65(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26822763
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00250.12e-07DNA-binding storekeeper protein-related transcriptional regulator